miRNA: 3'- uCGC---UGUUGC-AGCGGCAGCUGCUACu -5'
miRNA: 3'- -UCGcUGUugCAGCGGCAGCUGCUacu -5'
miRNA: 3'- uCGCUGUUGCa---GCGGCAGCUGcUACU- -5'
miRNA: 3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5'
Results 61 - 64 of 64 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11661 | 3' | -54 | NC_003102.1 | + | 122885 | 0.76 | 0.513526 |
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Target: 5'- uGCGuauGCGACGcUUGCCGUUGACGGUGc -3' miRNA: 3'- uCGC---UGUUGC-AGCGGCAGCUGCUACu -5' |
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| 11661 | 3' | -54 | NC_003102.1 | + | 71913 | 0.83 | 0.225717 |
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Target: 5'- gAGCaGCGugGUCGCCGUCGGCGAc-- -3' miRNA: 3'- -UCGcUGUugCAGCGGCAGCUGCUacu -5' |
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| 11661 | 3' | -54 | NC_003102.1 | + | 110193 | 0.83 | 0.209599 |
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Target: 5'- uGCGACAGCGgacaCGCCGUCGAC-AUGAu -3' miRNA: 3'- uCGCUGUUGCa---GCGGCAGCUGcUACU- -5' |
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| 11661 | 3' | -54 | NC_003102.1 | + | 35056 | 1.09 | 0.004535 |
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Target: 5'- cAGCGACAACGUCGCCGUCGACGAUGAg -3' miRNA: 3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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