miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 5' -49.2 NC_003102.1 + 3734 0.76 0.783531
Target:  5'- --aCAUCGGCggUGGCUGCUGcUGCu -3'
miRNA:   3'- gaaGUAGCUGaaGCCGAUGACaACGc -5'
11661 5' -49.2 NC_003102.1 + 4402 0.68 0.990523
Target:  5'- gUUCAUCGGgUUCgacgGGCUGCUGaucaucgagcUGCGg -3'
miRNA:   3'- gAAGUAGCUgAAG----CCGAUGACa---------ACGC- -5'
11661 5' -49.2 NC_003102.1 + 32399 0.66 0.997676
Target:  5'- uUUCAgaCGGCUgCGGCUGCg---GCGg -3'
miRNA:   3'- gAAGUa-GCUGAaGCCGAUGacaaCGC- -5'
11661 5' -49.2 NC_003102.1 + 35022 1.11 0.009582
Target:  5'- cCUUCAUCGACUUCGGCUACUGUUGCGa -3'
miRNA:   3'- -GAAGUAGCUGAAGCCGAUGACAACGC- -5'
11661 5' -49.2 NC_003102.1 + 36124 0.66 0.998388
Target:  5'- gUUCAUCGGauccaaagCGGCUGCg---GCGg -3'
miRNA:   3'- gAAGUAGCUgaa-----GCCGAUGacaaCGC- -5'
11661 5' -49.2 NC_003102.1 + 46349 0.71 0.95456
Target:  5'- --cCGUCGACUUCGGaggacgUGCUGUcUGCc -3'
miRNA:   3'- gaaGUAGCUGAAGCCg-----AUGACA-ACGc -5'
11661 5' -49.2 NC_003102.1 + 73996 0.67 0.99469
Target:  5'- --gCGUCGGCauaUCGGCgu-UGUUGCGc -3'
miRNA:   3'- gaaGUAGCUGa--AGCCGaugACAACGC- -5'
11661 5' -49.2 NC_003102.1 + 98384 0.78 0.680714
Target:  5'- -aUCGUCGACgUCGGCUGuCUGUcUGCu -3'
miRNA:   3'- gaAGUAGCUGaAGCCGAU-GACA-ACGc -5'
11661 5' -49.2 NC_003102.1 + 118019 0.69 0.977518
Target:  5'- -aUCGUCGAucuCUUCGGCguagGCgGUUGUu -3'
miRNA:   3'- gaAGUAGCU---GAAGCCGa---UGaCAACGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.