miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11662 5' -46.9 NC_003102.1 + 11304 0.66 0.999685
Target:  5'- -gUGGAuugGCGAcGAACAuguuCGUUgCGUAUa -3'
miRNA:   3'- aaACCU---UGCU-CUUGUu---GCAAgGCAUG- -5'
11662 5' -46.9 NC_003102.1 + 63571 0.66 0.9996
Target:  5'- --aGGAaucgacGCGGGAGCGGCuccUCCGUAa -3'
miRNA:   3'- aaaCCU------UGCUCUUGUUGca-AGGCAUg -5'
11662 5' -46.9 NC_003102.1 + 83005 0.67 0.999495
Target:  5'- -gUGGAcACGA--GCGACGUgucgUCGUACg -3'
miRNA:   3'- aaACCU-UGCUcuUGUUGCAa---GGCAUG- -5'
11662 5' -46.9 NC_003102.1 + 97432 0.67 0.999368
Target:  5'- cUUGGucaacauGCGGGGACAuuuGCGUUgcaCGUACu -3'
miRNA:   3'- aAACCu------UGCUCUUGU---UGCAAg--GCAUG- -5'
11662 5' -46.9 NC_003102.1 + 107307 0.67 0.99903
Target:  5'- ---cGGGCGAGGcCGACGacaaUCCGUACu -3'
miRNA:   3'- aaacCUUGCUCUuGUUGCa---AGGCAUG- -5'
11662 5' -46.9 NC_003102.1 + 66140 0.68 0.998809
Target:  5'- -gUGGAcaaguugcugAUGGGAcACAGCGUUUCGUGu -3'
miRNA:   3'- aaACCU----------UGCUCU-UGUUGCAAGGCAUg -5'
11662 5' -46.9 NC_003102.1 + 100009 0.68 0.998237
Target:  5'- aUUUGcGAACGAGAuCAAUGcaaCGUGCg -3'
miRNA:   3'- -AAAC-CUUGCUCUuGUUGCaagGCAUG- -5'
11662 5' -46.9 NC_003102.1 + 77129 0.7 0.992092
Target:  5'- --aGGGACGAGAACGACGag-UGUAa -3'
miRNA:   3'- aaaCCUUGCUCUUGUUGCaagGCAUg -5'
11662 5' -46.9 NC_003102.1 + 42129 1.09 0.018602
Target:  5'- gUUUGGAACGAGAACAACGUUCCGUACg -3'
miRNA:   3'- -AAACCUUGCUCUUGUUGCAAGGCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.