Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11663 | 3' | -55.2 | NC_003102.1 | + | 62987 | 0.66 | 0.90546 |
Target: 5'- uGCCGAAuugaaaCGCGagACGggCAGGAUCg -3' miRNA: 3'- uCGGUUUc-----GCGCggUGCuaGUCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 120453 | 0.67 | 0.873759 |
Target: 5'- -uCCGAAGCGCGCUuucagcgcucguguuACGGcgUCAGGGa- -3' miRNA: 3'- ucGGUUUCGCGCGG---------------UGCU--AGUCCUag -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 66689 | 0.67 | 0.866219 |
Target: 5'- uGCCGAcGUGUuugguccaacugaccGCCAUGAUUcgGGGAUCa -3' miRNA: 3'- uCGGUUuCGCG---------------CGGUGCUAG--UCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 33257 | 0.68 | 0.830518 |
Target: 5'- cAGUCGccGC-CGCCGcCGA-CAGGAUCg -3' miRNA: 3'- -UCGGUuuCGcGCGGU-GCUaGUCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 102950 | 0.69 | 0.776115 |
Target: 5'- aAGaCAAAGUGauCCGCGGUCAGcGAUCu -3' miRNA: 3'- -UCgGUUUCGCgcGGUGCUAGUC-CUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 130732 | 0.69 | 0.770375 |
Target: 5'- uGCUAcaacAGCGaCGCCgucgccagcaugaacACGAUUAGGAUCa -3' miRNA: 3'- uCGGUu---UCGC-GCGG---------------UGCUAGUCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 72346 | 0.69 | 0.756805 |
Target: 5'- uAGCCGAAGCG-GCC-CGAcaucUCAGcGUCg -3' miRNA: 3'- -UCGGUUUCGCgCGGuGCU----AGUCcUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 117694 | 0.71 | 0.634019 |
Target: 5'- cGCUuucauuGCGCGaCGCGAUCAuGGAUCa -3' miRNA: 3'- uCGGuuu---CGCGCgGUGCUAGU-CCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 99349 | 0.71 | 0.62356 |
Target: 5'- cAGCau-GGCGCGCguCGAacucuuuaggUCGGGAUCg -3' miRNA: 3'- -UCGguuUCGCGCGguGCU----------AGUCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 36114 | 0.72 | 0.613107 |
Target: 5'- -uCCAAAGCG-GCUGCGG-CGGGAUCg -3' miRNA: 3'- ucGGUUUCGCgCGGUGCUaGUCCUAG- -5' |
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11663 | 3' | -55.2 | NC_003102.1 | + | 42288 | 1.1 | 0.002223 |
Target: 5'- aAGCCAAAGCGCGCCACGAUCAGGAUCg -3' miRNA: 3'- -UCGGUUUCGCGCGGUGCUAGUCCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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