miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11663 3' -55.2 NC_003102.1 + 62987 0.66 0.90546
Target:  5'- uGCCGAAuugaaaCGCGagACGggCAGGAUCg -3'
miRNA:   3'- uCGGUUUc-----GCGCggUGCuaGUCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 120453 0.67 0.873759
Target:  5'- -uCCGAAGCGCGCUuucagcgcucguguuACGGcgUCAGGGa- -3'
miRNA:   3'- ucGGUUUCGCGCGG---------------UGCU--AGUCCUag -5'
11663 3' -55.2 NC_003102.1 + 66689 0.67 0.866219
Target:  5'- uGCCGAcGUGUuugguccaacugaccGCCAUGAUUcgGGGAUCa -3'
miRNA:   3'- uCGGUUuCGCG---------------CGGUGCUAG--UCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 33257 0.68 0.830518
Target:  5'- cAGUCGccGC-CGCCGcCGA-CAGGAUCg -3'
miRNA:   3'- -UCGGUuuCGcGCGGU-GCUaGUCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 102950 0.69 0.776115
Target:  5'- aAGaCAAAGUGauCCGCGGUCAGcGAUCu -3'
miRNA:   3'- -UCgGUUUCGCgcGGUGCUAGUC-CUAG- -5'
11663 3' -55.2 NC_003102.1 + 130732 0.69 0.770375
Target:  5'- uGCUAcaacAGCGaCGCCgucgccagcaugaacACGAUUAGGAUCa -3'
miRNA:   3'- uCGGUu---UCGC-GCGG---------------UGCUAGUCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 72346 0.69 0.756805
Target:  5'- uAGCCGAAGCG-GCC-CGAcaucUCAGcGUCg -3'
miRNA:   3'- -UCGGUUUCGCgCGGuGCU----AGUCcUAG- -5'
11663 3' -55.2 NC_003102.1 + 117694 0.71 0.634019
Target:  5'- cGCUuucauuGCGCGaCGCGAUCAuGGAUCa -3'
miRNA:   3'- uCGGuuu---CGCGCgGUGCUAGU-CCUAG- -5'
11663 3' -55.2 NC_003102.1 + 99349 0.71 0.62356
Target:  5'- cAGCau-GGCGCGCguCGAacucuuuaggUCGGGAUCg -3'
miRNA:   3'- -UCGguuUCGCGCGguGCU----------AGUCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 36114 0.72 0.613107
Target:  5'- -uCCAAAGCG-GCUGCGG-CGGGAUCg -3'
miRNA:   3'- ucGGUUUCGCgCGGUGCUaGUCCUAG- -5'
11663 3' -55.2 NC_003102.1 + 42288 1.1 0.002223
Target:  5'- aAGCCAAAGCGCGCCACGAUCAGGAUCg -3'
miRNA:   3'- -UCGGUUUCGCGCGGUGCUAGUCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.