miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11664 3' -51.7 NC_003102.1 + 6598 0.66 0.983174
Target:  5'- cCGAugguGACGUUGGCgcugGCGCUGcCGAGAc -3'
miRNA:   3'- -GUUuu--UUGCGGUCGa---CGUGGC-GCUCU- -5'
11664 3' -51.7 NC_003102.1 + 29145 0.66 0.978806
Target:  5'- --uAAGACGCgAGCgcGCGCCGCa--- -3'
miRNA:   3'- guuUUUUGCGgUCGa-CGUGGCGcucu -5'
11664 3' -51.7 NC_003102.1 + 530 0.67 0.960716
Target:  5'- aGAAGGGCGgCGGUUGUcCCGUGAuGAa -3'
miRNA:   3'- gUUUUUUGCgGUCGACGuGGCGCU-CU- -5'
11664 3' -51.7 NC_003102.1 + 127605 0.67 0.956896
Target:  5'- -cGAAAGCGCUuaAGUcugUGUACaCGCGGGAc -3'
miRNA:   3'- guUUUUUGCGG--UCG---ACGUG-GCGCUCU- -5'
11664 3' -51.7 NC_003102.1 + 43348 0.68 0.943947
Target:  5'- --uGGAACGCCGGCaUGUucagAUUGUGAGAg -3'
miRNA:   3'- guuUUUUGCGGUCG-ACG----UGGCGCUCU- -5'
11664 3' -51.7 NC_003102.1 + 35551 0.71 0.853063
Target:  5'- -------aGCCAaGuCUGCGCUGCGAGAc -3'
miRNA:   3'- guuuuuugCGGU-C-GACGUGGCGCUCU- -5'
11664 3' -51.7 NC_003102.1 + 129127 0.74 0.710549
Target:  5'- -cAGAAGCGgCAGCUGC-CgGCGGGGu -3'
miRNA:   3'- guUUUUUGCgGUCGACGuGgCGCUCU- -5'
11664 3' -51.7 NC_003102.1 + 70733 0.74 0.689545
Target:  5'- aCGAAGcGCGCCAGCUG-ACCGuCGAcGAc -3'
miRNA:   3'- -GUUUUuUGCGGUCGACgUGGC-GCU-CU- -5'
11664 3' -51.7 NC_003102.1 + 46238 1.1 0.005221
Target:  5'- aCAAAAAACGCCAGCUGCACCGCGAGAa -3'
miRNA:   3'- -GUUUUUUGCGGUCGACGUGGCGCUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.