miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11664 5' -55.8 NC_003102.1 + 134953 0.66 0.912752
Target:  5'- uGCgaaCCGUCGccgcucaacacGCCGACGCCGg-- -3'
miRNA:   3'- -CGa--GGCAGCcauu-------CGGCUGCGGCaaa -5'
11664 5' -55.8 NC_003102.1 + 107303 0.66 0.897783
Target:  5'- ---gCGUCGGgcgAGGCCGACGacaauCCGUa- -3'
miRNA:   3'- cgagGCAGCCa--UUCGGCUGC-----GGCAaa -5'
11664 5' -55.8 NC_003102.1 + 39248 0.66 0.884281
Target:  5'- aGUcgCCGUCGGUuuGAGaCCGAgGaCCGUg- -3'
miRNA:   3'- -CGa-GGCAGCCA--UUC-GGCUgC-GGCAaa -5'
11664 5' -55.8 NC_003102.1 + 22696 0.69 0.757716
Target:  5'- cGCUaCUGUUGGc--GCCGAUGCCGa-- -3'
miRNA:   3'- -CGA-GGCAGCCauuCGGCUGCGGCaaa -5'
11664 5' -55.8 NC_003102.1 + 32709 0.69 0.738291
Target:  5'- aUUCUGUugCGGUucGCCGuCGCCGUUc -3'
miRNA:   3'- cGAGGCA--GCCAuuCGGCuGCGGCAAa -5'
11664 5' -55.8 NC_003102.1 + 63668 0.72 0.606193
Target:  5'- aGCUCCGgaaCGGaUAcGUCGACGCCGc-- -3'
miRNA:   3'- -CGAGGCa--GCC-AUuCGGCUGCGGCaaa -5'
11664 5' -55.8 NC_003102.1 + 79769 0.72 0.59594
Target:  5'- -aUCCGUCuuUGAGCaCGACGCCGUc- -3'
miRNA:   3'- cgAGGCAGccAUUCG-GCUGCGGCAaa -5'
11664 5' -55.8 NC_003102.1 + 129014 0.77 0.331478
Target:  5'- uGCUCCGUCGGc--GCCGGcCGCCGc-- -3'
miRNA:   3'- -CGAGGCAGCCauuCGGCU-GCGGCaaa -5'
11664 5' -55.8 NC_003102.1 + 46204 1.08 0.003462
Target:  5'- gGCUCCGUCGGUAAGCCGACGCCGUUUa -3'
miRNA:   3'- -CGAGGCAGCCAUUCGGCUGCGGCAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.