miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11665 3' -43.1 NC_003102.1 + 74678 0.75 0.988233
Target:  5'- ---gUACGAAUGUCAGGgcgaUGUGCAAUg -3'
miRNA:   3'- auaaAUGCUUAUAGUCUa---GCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 117511 0.66 1
Target:  5'- ----aGCGGucuUAUCGGuugauccaugaucgcGUCGCGCAAUg -3'
miRNA:   3'- auaaaUGCUu--AUAGUC---------------UAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 93598 0.66 1
Target:  5'- -----uCGAAUAUCA--UCGCGCcGCa -3'
miRNA:   3'- auaaauGCUUAUAGUcuAGCGCGuUG- -5'
11665 3' -43.1 NC_003102.1 + 20831 0.66 1
Target:  5'- ---cUACGGc---CGGAUCGCGCAc- -3'
miRNA:   3'- auaaAUGCUuauaGUCUAGCGCGUug -5'
11665 3' -43.1 NC_003102.1 + 114354 0.67 0.999999
Target:  5'- ----aGCGuaugAUCGaAUCGCGCGACu -3'
miRNA:   3'- auaaaUGCuua-UAGUcUAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 6970 0.67 0.999999
Target:  5'- aUGUUUugGAcgugGUCAuGGUCGCGUg-- -3'
miRNA:   3'- -AUAAAugCUua--UAGU-CUAGCGCGuug -5'
11665 3' -43.1 NC_003102.1 + 61819 0.68 0.999994
Target:  5'- --aUUAuCGAGUAUCGgcgcacauuGAUCGCGUAAg -3'
miRNA:   3'- auaAAU-GCUUAUAGU---------CUAGCGCGUUg -5'
11665 3' -43.1 NC_003102.1 + 31528 0.69 0.999966
Target:  5'- ----gACGcGAUAcCAGAUCGCGCGu- -3'
miRNA:   3'- auaaaUGC-UUAUaGUCUAGCGCGUug -5'
11665 3' -43.1 NC_003102.1 + 88562 0.71 0.99958
Target:  5'- ---aUGCGGugagaccgGUaAGAUCGCGCAACg -3'
miRNA:   3'- auaaAUGCUua------UAgUCUAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 108477 0.71 0.999329
Target:  5'- -----uCGGAUGUCGGA--GCGCAACa -3'
miRNA:   3'- auaaauGCUUAUAGUCUagCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 42255 0.75 0.985969
Target:  5'- ----gGCGGAUcguuuagugcgcgcGUCAGAUUGUGCGACg -3'
miRNA:   3'- auaaaUGCUUA--------------UAGUCUAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 31438 0.72 0.999161
Target:  5'- ----aGCGAAUAUUAGAcgcugcuggUCGgGCGGCa -3'
miRNA:   3'- auaaaUGCUUAUAGUCU---------AGCgCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 95815 0.7 0.999887
Target:  5'- ----cACGGA--UCAGGUCGCGUAcuACg -3'
miRNA:   3'- auaaaUGCUUauAGUCUAGCGCGU--UG- -5'
11665 3' -43.1 NC_003102.1 + 28120 0.7 0.999887
Target:  5'- aUGUUUACGAaaucuucauugcAUAUCAGAuuuUCGuCGUAAUg -3'
miRNA:   3'- -AUAAAUGCU------------UAUAGUCU---AGC-GCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 49042 0.68 0.999988
Target:  5'- --cUUGC----AUCGGGUCGCGCAAa -3'
miRNA:   3'- auaAAUGcuuaUAGUCUAGCGCGUUg -5'
11665 3' -43.1 NC_003102.1 + 17500 0.68 0.999991
Target:  5'- ----aACGGAUccgauGUaCAGAUCGCGuCGGCg -3'
miRNA:   3'- auaaaUGCUUA-----UA-GUCUAGCGC-GUUG- -5'
11665 3' -43.1 NC_003102.1 + 37946 0.68 0.999991
Target:  5'- gAUUUAauCGAAUcaaAUCuGAUUGUGCGGCg -3'
miRNA:   3'- aUAAAU--GCUUA---UAGuCUAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 23367 0.67 0.999996
Target:  5'- ---gUACGAGgaagaaggCAGGUaCGUGCGACg -3'
miRNA:   3'- auaaAUGCUUaua-----GUCUA-GCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 94278 0.67 0.999996
Target:  5'- ---gUACGAugccGUGauUCGuGAUCGCGUAACu -3'
miRNA:   3'- auaaAUGCU----UAU--AGU-CUAGCGCGUUG- -5'
11665 3' -43.1 NC_003102.1 + 76940 0.67 0.999999
Target:  5'- ----gACGAAU-UgAGAUCGCGUAGa -3'
miRNA:   3'- auaaaUGCUUAuAgUCUAGCGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.