miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11665 5' -45.2 NC_003102.1 + 50778 1.05 0.043278
Target:  5'- cAAAUUGGCACAAUCUACGAUCGUAGUc -3'
miRNA:   3'- -UUUAACCGUGUUAGAUGCUAGCAUCA- -5'
11665 5' -45.2 NC_003102.1 + 91483 0.72 0.987716
Target:  5'- ----gGGCAUAAUgUACGAUCGgUAGa -3'
miRNA:   3'- uuuaaCCGUGUUAgAUGCUAGC-AUCa -5'
11665 5' -45.2 NC_003102.1 + 97702 0.71 0.996385
Target:  5'- ----cGGCACGGUCcACGAUC-UAGUu -3'
miRNA:   3'- uuuaaCCGUGUUAGaUGCUAGcAUCA- -5'
11665 5' -45.2 NC_003102.1 + 50609 0.69 0.999243
Target:  5'- ----cGGCGa---CUACGAUCGUAGa -3'
miRNA:   3'- uuuaaCCGUguuaGAUGCUAGCAUCa -5'
11665 5' -45.2 NC_003102.1 + 63090 0.68 0.999703
Target:  5'- ----cGGCACGGUCcagauCGAUCGUGu- -3'
miRNA:   3'- uuuaaCCGUGUUAGau---GCUAGCAUca -5'
11665 5' -45.2 NC_003102.1 + 96494 0.66 0.999958
Target:  5'- ---cUGGCcgACAAUCUgAUGAUCGgcGUc -3'
miRNA:   3'- uuuaACCG--UGUUAGA-UGCUAGCauCA- -5'
11665 5' -45.2 NC_003102.1 + 52994 0.66 0.999984
Target:  5'- ---aUGGCGCGGUCcGCGAUaGUAu- -3'
miRNA:   3'- uuuaACCGUGUUAGaUGCUAgCAUca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.