Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11666 | 3' | -51.5 | NC_003102.1 | + | 114950 | 0.67 | 0.979629 |
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Target: 5'- ----cGGUCACauUGGCGGucaaGACGGCa -3' miRNA: 3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 41610 | 0.67 | 0.977264 |
|
Target: 5'- gGCAagGGcgcuaauccuUCGCU-CGGCGACGAaaacguugaCGGCg -3' miRNA: 3'- -UGUaaCU----------AGUGAuGCCGCUGCU---------GCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 57310 | 0.67 | 0.974436 |
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Target: 5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3' miRNA: 3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 19727 | 0.67 | 0.971938 |
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Target: 5'- uACGUaaUGA-CAU--CGGCGuCGGCGGCg -3' miRNA: 3'- -UGUA--ACUaGUGauGCCGCuGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 40325 | 0.68 | 0.965766 |
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Target: 5'- ----cGAUCGCUucggcgagauGgGGCGACGA-GGCg -3' miRNA: 3'- uguaaCUAGUGA----------UgCCGCUGCUgCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 102047 | 0.68 | 0.965766 |
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Target: 5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3' miRNA: 3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5' |
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| 11666 | 3' | -51.5 | NC_003102.1 | + | 58835 | 0.66 | 0.991411 |
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Target: 5'- gUAUUGAUCAagaUGauGCcgacuGCGACGGCg -3' miRNA: 3'- uGUAACUAGUg--AUgcCGc----UGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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