miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11666 3' -51.5 NC_003102.1 + 1563 0.66 0.991055
Target:  5'- -uGUUGAUCGgUAggcaggaucgauugUGGCGGCGGUGGUg -3'
miRNA:   3'- ugUAACUAGUgAU--------------GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 1643 0.68 0.968961
Target:  5'- -gAUUGAUUguGgUAaaggUGGUGGCGGCGGCg -3'
miRNA:   3'- ugUAACUAG--UgAU----GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 6586 0.66 0.983804
Target:  5'- cGCA-UGA-CGCUACcgauGGUGACGuuGGCg -3'
miRNA:   3'- -UGUaACUaGUGAUG----CCGCUGCugCCG- -5'
11666 3' -51.5 NC_003102.1 + 6639 0.68 0.954812
Target:  5'- gGCGUUGGU-GCUGCugauggugcuGGUGACGuuGGCg -3'
miRNA:   3'- -UGUAACUAgUGAUG----------CCGCUGCugCCG- -5'
11666 3' -51.5 NC_003102.1 + 10791 0.66 0.988809
Target:  5'- ---aUGAguucCACUACGGCGccCGAUGcGCu -3'
miRNA:   3'- uguaACUa---GUGAUGCCGCu-GCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 13237 0.66 0.990177
Target:  5'- -aGUUGAUguCUACGGCGA-GACcGUu -3'
miRNA:   3'- ugUAACUAguGAUGCCGCUgCUGcCG- -5'
11666 3' -51.5 NC_003102.1 + 16431 0.74 0.74788
Target:  5'- -gGUUGAUCGCcGCGauucugccgcagucGCGGCGGCGGUc -3'
miRNA:   3'- ugUAACUAGUGaUGC--------------CGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17484 0.66 0.987297
Target:  5'- ----aGAUCGCguCGGCGGguauguCGAUGGCg -3'
miRNA:   3'- uguaaCUAGUGauGCCGCU------GCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17725 0.78 0.513039
Target:  5'- ----aGAagGCgGCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUagUGaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 17747 0.66 0.985632
Target:  5'- -----------gGCGGCGGCGGCGGUg -3'
miRNA:   3'- uguaacuagugaUGCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 18377 0.66 0.990177
Target:  5'- aGCA-UGAUCuugGCGGuCGcguuccaaaACGGCGGCg -3'
miRNA:   3'- -UGUaACUAGugaUGCC-GC---------UGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 19174 0.66 0.991411
Target:  5'- cACGUUGAUCGCgucguugaGGaCGACGcuuguguaccCGGCg -3'
miRNA:   3'- -UGUAACUAGUGaug-----CC-GCUGCu---------GCCG- -5'
11666 3' -51.5 NC_003102.1 + 19483 0.7 0.90871
Target:  5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3'
miRNA:   3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5'
11666 3' -51.5 NC_003102.1 + 19727 0.67 0.971938
Target:  5'- uACGUaaUGA-CAU--CGGCGuCGGCGGCg -3'
miRNA:   3'- -UGUA--ACUaGUGauGCCGCuGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 21453 0.69 0.931713
Target:  5'- ----cGAUCGgU-CGGCGGCGAUGcGCg -3'
miRNA:   3'- uguaaCUAGUgAuGCCGCUGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 23766 0.68 0.962347
Target:  5'- gACAUUaGA-UugUACGuGuCGAUGGCGGCa -3'
miRNA:   3'- -UGUAA-CUaGugAUGC-C-GCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 24826 0.66 0.991411
Target:  5'- gAC-UUGAUCAUggUGGCGcCGAUGuGCa -3'
miRNA:   3'- -UGuAACUAGUGauGCCGCuGCUGC-CG- -5'
11666 3' -51.5 NC_003102.1 + 32381 0.75 0.710446
Target:  5'- uACGUUuucccGAUCgguuuucagacgGCUGCGGCuGCGGCGGCa -3'
miRNA:   3'- -UGUAA-----CUAG------------UGAUGCCGcUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 33092 0.81 0.391053
Target:  5'- ----cGAUC-CUGuCGGCGGCGGCGGCg -3'
miRNA:   3'- uguaaCUAGuGAU-GCCGCUGCUGCCG- -5'
11666 3' -51.5 NC_003102.1 + 36533 0.66 0.987297
Target:  5'- aACAUUGGaUACcggACGGcCGACGGauCGGUg -3'
miRNA:   3'- -UGUAACUaGUGa--UGCC-GCUGCU--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.