Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11666 | 3' | -51.5 | NC_003102.1 | + | 127450 | 0.66 | 0.98437 |
Target: 5'- uACAUUGAaaauaaucgcaUCACggaugugcacguaaaGGCGAccaaCGACGGCg -3' miRNA: 3'- -UGUAACU-----------AGUGaug------------CCGCU----GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 6586 | 0.66 | 0.983804 |
Target: 5'- cGCA-UGA-CGCUACcgauGGUGACGuuGGCg -3' miRNA: 3'- -UGUaACUaGUGAUG----CCGCUGCugCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 114950 | 0.67 | 0.979629 |
Target: 5'- ----cGGUCACauUGGCGGucaaGACGGCa -3' miRNA: 3'- uguaaCUAGUGauGCCGCUg---CUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 41610 | 0.67 | 0.977264 |
Target: 5'- gGCAagGGcgcuaauccuUCGCU-CGGCGACGAaaacguugaCGGCg -3' miRNA: 3'- -UGUaaCU----------AGUGAuGCCGCUGCU---------GCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 57310 | 0.67 | 0.974436 |
Target: 5'- gACAUU-AUCACUcuaaaagucaacaACGGUcucGAUGAUGGCg -3' miRNA: 3'- -UGUAAcUAGUGA-------------UGCCG---CUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 73583 | 0.67 | 0.971938 |
Target: 5'- ----cGAUCACguugAUGGCGuacgcucCGAUGGCu -3' miRNA: 3'- uguaaCUAGUGa---UGCCGCu------GCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 19727 | 0.67 | 0.971938 |
Target: 5'- uACGUaaUGA-CAU--CGGCGuCGGCGGCg -3' miRNA: 3'- -UGUA--ACUaGUGauGCCGCuGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 1643 | 0.68 | 0.968961 |
Target: 5'- -gAUUGAUUguGgUAaaggUGGUGGCGGCGGCg -3' miRNA: 3'- ugUAACUAG--UgAU----GCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 40325 | 0.68 | 0.965766 |
Target: 5'- ----cGAUCGCUucggcgagauGgGGCGACGA-GGCg -3' miRNA: 3'- uguaaCUAGUGA----------UgCCGCUGCUgCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 102047 | 0.68 | 0.965766 |
Target: 5'- uCAUcGaAUCGaaGCGGCGGCGGUGGCg -3' miRNA: 3'- uGUAaC-UAGUgaUGCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 118308 | 0.68 | 0.962347 |
Target: 5'- cACAUguuugGAUaguagACgggAUGGCGuGCGACGGCg -3' miRNA: 3'- -UGUAa----CUAg----UGa--UGCCGC-UGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 63845 | 0.68 | 0.962347 |
Target: 5'- -aAUUGAUCAagcGCGGCGuCGACGu- -3' miRNA: 3'- ugUAACUAGUga-UGCCGCuGCUGCcg -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 23766 | 0.68 | 0.962347 |
Target: 5'- gACAUUaGA-UugUACGuGuCGAUGGCGGCa -3' miRNA: 3'- -UGUAA-CUaGugAUGC-C-GCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 6639 | 0.68 | 0.954812 |
Target: 5'- gGCGUUGGU-GCUGCugauggugcuGGUGACGuuGGCg -3' miRNA: 3'- -UGUAACUAgUGAUG----------CCGCUGCugCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 121095 | 0.69 | 0.95026 |
Target: 5'- ----cGGUCGCUcguugauguCGGCGACGacgccguGCGGCa -3' miRNA: 3'- uguaaCUAGUGAu--------GCCGCUGC-------UGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 128713 | 0.69 | 0.946316 |
Target: 5'- ---cUGAgCGCgUAUaGCGGCGACGGCg -3' miRNA: 3'- uguaACUaGUG-AUGcCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 135873 | 0.69 | 0.93733 |
Target: 5'- aACuguUUGAaaaguaUCACgguaauucaauuucUGGCGACGACGGCg -3' miRNA: 3'- -UGu--AACU------AGUGau------------GCCGCUGCUGCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 21453 | 0.69 | 0.931713 |
Target: 5'- ----cGAUCGgU-CGGCGGCGAUGcGCg -3' miRNA: 3'- uguaaCUAGUgAuGCCGCUGCUGC-CG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 130511 | 0.7 | 0.90871 |
Target: 5'- aACAUUGAUauuuGCaagACGGCGAgGAaaaCGGCu -3' miRNA: 3'- -UGUAACUAg---UGa--UGCCGCUgCU---GCCG- -5' |
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11666 | 3' | -51.5 | NC_003102.1 | + | 19483 | 0.7 | 0.90871 |
Target: 5'- aACAUUGAUUgucCgggugGCGGCGACGACa-- -3' miRNA: 3'- -UGUAACUAGu--Ga----UGCCGCUGCUGccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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