miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11667 3' -54.5 NC_003102.1 + 62192 1.06 0.005115
Target:  5'- cGAAAGCGACGGGCCGAAACGCCGAUUg -3'
miRNA:   3'- -CUUUCGCUGCCCGGCUUUGCGGCUAA- -5'
11667 3' -54.5 NC_003102.1 + 129182 0.72 0.640581
Target:  5'- cGAGuAGCGGCGGccggcGCCGAcggagcaguaGACGCCGAa- -3'
miRNA:   3'- -CUU-UCGCUGCC-----CGGCU----------UUGCGGCUaa -5'
11667 3' -54.5 NC_003102.1 + 113816 0.71 0.692668
Target:  5'- cGAAAcGUGGCGGGCgCG-GGCGUCGAUUu -3'
miRNA:   3'- -CUUU-CGCUGCCCG-GCuUUGCGGCUAA- -5'
11667 3' -54.5 NC_003102.1 + 48998 0.71 0.692668
Target:  5'- --cGGCGACGGcGgCGAAACGCCcGUUc -3'
miRNA:   3'- cuuUCGCUGCC-CgGCUUUGCGGcUAA- -5'
11667 3' -54.5 NC_003102.1 + 133948 0.71 0.702964
Target:  5'- ---uGCGAC-GGCUGAGACGCCGc-- -3'
miRNA:   3'- cuuuCGCUGcCCGGCUUUGCGGCuaa -5'
11667 3' -54.5 NC_003102.1 + 17752 0.67 0.87571
Target:  5'- --cGGCGGCGGuGCCGG--UGUCGGUg -3'
miRNA:   3'- cuuUCGCUGCC-CGGCUuuGCGGCUAa -5'
11667 3' -54.5 NC_003102.1 + 72605 0.67 0.882974
Target:  5'- ---cGUGAUGGGCacagauCGAAACGCUGGg- -3'
miRNA:   3'- cuuuCGCUGCCCG------GCUUUGCGGCUaa -5'
11667 3' -54.5 NC_003102.1 + 81293 0.66 0.927091
Target:  5'- --uGGCGAgGGGCagcucaGcuACGCCGAc- -3'
miRNA:   3'- cuuUCGCUgCCCGg-----CuuUGCGGCUaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.