miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11667 5' -59.8 NC_003102.1 + 87604 0.66 0.77832
Target:  5'- gGuGCCaCCGCCgUCG-CCGACG-UCGa -3'
miRNA:   3'- gCuCGGcGGCGG-AGCuGGCUGCuAGU- -5'
11667 5' -59.8 NC_003102.1 + 71738 0.66 0.760068
Target:  5'- --uGCCGCUGuCCUUGucGCCGACGG-CGa -3'
miRNA:   3'- gcuCGGCGGC-GGAGC--UGGCUGCUaGU- -5'
11667 5' -59.8 NC_003102.1 + 36653 0.66 0.760068
Target:  5'- uGGGCgugugUGCCGuCCUCGGCCauccauuCGGUCAg -3'
miRNA:   3'- gCUCG-----GCGGC-GGAGCUGGcu-----GCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 95394 0.66 0.754506
Target:  5'- aCGAGCCGCguuggacgucCGCUUCGAacaCGACaaaaacguacaaucgGGUCAg -3'
miRNA:   3'- -GCUCGGCG----------GCGGAGCUg--GCUG---------------CUAGU- -5'
11667 5' -59.8 NC_003102.1 + 137006 0.66 0.750777
Target:  5'- uGGGgCGCCGCUggUgGGCCGAaaacaUGAUCGa -3'
miRNA:   3'- gCUCgGCGGCGG--AgCUGGCU-----GCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 24147 0.66 0.741389
Target:  5'- -uGGCCGCUGCCguc-UCGGCGAUUAg -3'
miRNA:   3'- gcUCGGCGGCGGagcuGGCUGCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 81448 0.66 0.741389
Target:  5'- uGAGCUGCC-CCUCG-CCaACGGUg- -3'
miRNA:   3'- gCUCGGCGGcGGAGCuGGcUGCUAgu -5'
11667 5' -59.8 NC_003102.1 + 93579 0.66 0.741389
Target:  5'- gCGGcGCUcUCGCCUCGACCGuCGAc-- -3'
miRNA:   3'- -GCU-CGGcGGCGGAGCUGGCuGCUagu -5'
11667 5' -59.8 NC_003102.1 + 19817 0.66 0.731911
Target:  5'- aCGGGaCCGCCGCCggaGAUCcacGCGAUUc -3'
miRNA:   3'- -GCUC-GGCGGCGGag-CUGGc--UGCUAGu -5'
11667 5' -59.8 NC_003102.1 + 59649 0.67 0.68347
Target:  5'- ---aUCGCCGUCUCG-CCGACGAg-- -3'
miRNA:   3'- gcucGGCGGCGGAGCuGGCUGCUagu -5'
11667 5' -59.8 NC_003102.1 + 133882 0.68 0.66178
Target:  5'- cCGAGCUGCauCGCCUUG-CCGucggugagaauuCGAUCAa -3'
miRNA:   3'- -GCUCGGCG--GCGGAGCuGGCu-----------GCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 94801 0.68 0.653861
Target:  5'- -uAGCgGCCcUCUCGGCCGACGuuUCGg -3'
miRNA:   3'- gcUCGgCGGcGGAGCUGGCUGCu-AGU- -5'
11667 5' -59.8 NC_003102.1 + 113737 0.69 0.58454
Target:  5'- uGAGCgGCCGCCacgucgauUCGGUCGACGAc-- -3'
miRNA:   3'- gCUCGgCGGCGG--------AGCUGGCUGCUagu -5'
11667 5' -59.8 NC_003102.1 + 130294 0.69 0.58454
Target:  5'- uCGGcGCCGCCGCaugaCGAaaccgaUGACGAUCAa -3'
miRNA:   3'- -GCU-CGGCGGCGga--GCUg-----GCUGCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 22682 0.7 0.526268
Target:  5'- cCGAuGCCGaCCGCUUCGACCGcucaGAUa- -3'
miRNA:   3'- -GCU-CGGC-GGCGGAGCUGGCug--CUAgu -5'
11667 5' -59.8 NC_003102.1 + 39251 0.7 0.516754
Target:  5'- aCGAGUCGCCGUCgguuugaGACCGAgGAcCGu -3'
miRNA:   3'- -GCUCGGCGGCGGag-----CUGGCUgCUaGU- -5'
11667 5' -59.8 NC_003102.1 + 64730 0.7 0.516754
Target:  5'- uGGGCCGCagcacCGCCUUGuCCGACG-UUAa -3'
miRNA:   3'- gCUCGGCG-----GCGGAGCuGGCUGCuAGU- -5'
11667 5' -59.8 NC_003102.1 + 33253 0.7 0.50731
Target:  5'- --cGCCGCCGCCgcCGACagGAuCGAUCGa -3'
miRNA:   3'- gcuCGGCGGCGGa-GCUGg-CU-GCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 80125 0.7 0.50637
Target:  5'- aGcGCCGCCGaugugauUCUCGACCaugucgucGACGAUCAu -3'
miRNA:   3'- gCuCGGCGGC-------GGAGCUGG--------CUGCUAGU- -5'
11667 5' -59.8 NC_003102.1 + 101887 0.71 0.452339
Target:  5'- --cGCCGCCGCUUCGAuUCGAUGAc-- -3'
miRNA:   3'- gcuCGGCGGCGGAGCU-GGCUGCUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.