miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11668 5' -69.4 NC_003102.1 + 131169 0.67 0.29597
Target:  5'- aGGCaaCGAGCUCaGCGgCacguaGCGCCGUCGg -3'
miRNA:   3'- -CCGg-GCUCGGG-CGCgGg----CGCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 128923 0.67 0.283612
Target:  5'- cGGCuacaauuacugCCGGuCCUGCGUCgGcCGCCGCCGc -3'
miRNA:   3'- -CCG-----------GGCUcGGGCGCGGgC-GCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 98179 0.67 0.29597
Target:  5'- uGGUCUu-GCCCGUGCaggCGaCGCCGUCGa -3'
miRNA:   3'- -CCGGGcuCGGGCGCGg--GC-GCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 92265 0.69 0.217939
Target:  5'- aGUUCGccUCCGaCGCCgGCGCCGCCGu -3'
miRNA:   3'- cCGGGCucGGGC-GCGGgCGCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 85051 0.7 0.18174
Target:  5'- cGCCggCGGGCUCGCaaugGUUCGCGUCGCCGu -3'
miRNA:   3'- cCGG--GCUCGGGCG----CGGGCGCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 63688 0.66 0.342494
Target:  5'- cGGacaaCCGAucacGUCCGCGUUCGCGCCuagucCCGa -3'
miRNA:   3'- -CCg---GGCU----CGGGCGCGGGCGCGGc----GGC- -5'
11668 5' -69.4 NC_003102.1 + 62386 1.09 0.000204
Target:  5'- aGGCCCGAGCCCGCGCCCGCGCCGCCGa -3'
miRNA:   3'- -CCGGGCUCGGGCGCGGGCGCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 57897 0.66 0.349556
Target:  5'- cGGCCaCGuucGCCgagaggcuaauCGCGUUCGcCGCCGUCGa -3'
miRNA:   3'- -CCGG-GCu--CGG-----------GCGCGGGC-GCGGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 47013 0.66 0.342494
Target:  5'- cGUCCGAGUucgauauauucaCCGUGCCCgauacagacGCGuCCGUCGa -3'
miRNA:   3'- cCGGGCUCG------------GGCGCGGG---------CGC-GGCGGC- -5'
11668 5' -69.4 NC_003102.1 + 23438 0.69 0.222874
Target:  5'- cGGCUCGAgguaaacgGCaaaCGCGCCCGgucucuuauUGCCGCCc -3'
miRNA:   3'- -CCGGGCU--------CGg--GCGCGGGC---------GCGGCGGc -5'
11668 5' -69.4 NC_003102.1 + 17376 0.66 0.335536
Target:  5'- cGCCCGuGCUguuuaGCGCgUCGCGCaCGUCGc -3'
miRNA:   3'- cCGGGCuCGGg----CGCG-GGCGCG-GCGGC- -5'
11668 5' -69.4 NC_003102.1 + 4465 0.76 0.066617
Target:  5'- aGCCCGAGCCCGaGCCCGaGCCcgaGCCc -3'
miRNA:   3'- cCGGGCUCGGGCgCGGGCgCGG---CGGc -5'
11668 5' -69.4 NC_003102.1 + 4298 0.68 0.25451
Target:  5'- gGGCUCGGGCUCGgGCUCGgGCUcggGCUc -3'
miRNA:   3'- -CCGGGCUCGGGCgCGGGCgCGG---CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.