Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11669 | 5' | -56.1 | NC_003102.1 | + | 63650 | 1.05 | 0.004672 |
Target: 5'- aACAGCAACGACCGCAGACGACGCGAUc -3' miRNA: 3'- -UGUCGUUGCUGGCGUCUGCUGCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 17732 | 0.77 | 0.320499 |
Target: 5'- gGCGGCGGCGGCgGCGGcgGCGGCgGCGGUg -3' miRNA: 3'- -UGUCGUUGCUGgCGUC--UGCUG-CGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 60200 | 0.75 | 0.375259 |
Target: 5'- gGCAGCGGCGGCgGCGGcgGCGAUGCa-- -3' miRNA: 3'- -UGUCGUUGCUGgCGUC--UGCUGCGcua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 105499 | 0.75 | 0.392025 |
Target: 5'- aACAGCGGCGACgaCGguGACGACGaaaaaGAUg -3' miRNA: 3'- -UGUCGUUGCUG--GCguCUGCUGCg----CUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 92419 | 0.74 | 0.46372 |
Target: 5'- cACAGCGGCGAgCGCuuGGCGAuaUGCGAa -3' miRNA: 3'- -UGUCGUUGCUgGCGu-CUGCU--GCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 114985 | 0.73 | 0.482699 |
Target: 5'- aACGGCGGCGACagCGguGGCgGugGCGGUg -3' miRNA: 3'- -UGUCGUUGCUG--GCguCUG-CugCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 32419 | 0.72 | 0.561911 |
Target: 5'- gGCGGCAACGGuuGagaAGAaGACGCGAc -3' miRNA: 3'- -UGUCGUUGCUggCg--UCUgCUGCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 63909 | 0.72 | 0.582328 |
Target: 5'- cGCAGaCAACGguuGCCGCaaAGGCGAUGUGGUu -3' miRNA: 3'- -UGUC-GUUGC---UGGCG--UCUGCUGCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 62028 | 0.71 | 0.638018 |
Target: 5'- uACGGCGACGACgGCAucauccgaugaaaccGACGAuccuuaCGCGAUc -3' miRNA: 3'- -UGUCGUUGCUGgCGU---------------CUGCU------GCGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 23705 | 0.71 | 0.633882 |
Target: 5'- gAguGUGGCGGgCGUAGGCGGCGCGu- -3' miRNA: 3'- -UguCGUUGCUgGCGUCUGCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 37871 | 0.71 | 0.602891 |
Target: 5'- gGCGGCGGCGGCgGCGguGAUGAUGaCGAa -3' miRNA: 3'- -UGUCGUUGCUGgCGU--CUGCUGC-GCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 134371 | 0.71 | 0.61321 |
Target: 5'- gUAGCGGCGGCgGCGG-CGGCgGCGGUc -3' miRNA: 3'- uGUCGUUGCUGgCGUCuGCUG-CGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 33105 | 0.71 | 0.632848 |
Target: 5'- gGCGGCGGCGACUGCAcGGCguuguuugucucuGACGgGAa -3' miRNA: 3'- -UGUCGUUGCUGGCGU-CUG-------------CUGCgCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 129106 | 0.7 | 0.664859 |
Target: 5'- -gGGUAGCGGCgGCGGcCGACGCa-- -3' miRNA: 3'- ugUCGUUGCUGgCGUCuGCUGCGcua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 136689 | 0.7 | 0.64422 |
Target: 5'- uGCAGCuggUGACCGUuGACGAUGCGc- -3' miRNA: 3'- -UGUCGuu-GCUGGCGuCUGCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 135091 | 0.7 | 0.675142 |
Target: 5'- -gGGCGACGACgGCGGuggcugguuCGACGCGu- -3' miRNA: 3'- ugUCGUUGCUGgCGUCu--------GCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 81545 | 0.7 | 0.664859 |
Target: 5'- cGCGGUcGCcgUCGCAGACGACGCGu- -3' miRNA: 3'- -UGUCGuUGcuGGCGUCUGCUGCGCua -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 133908 | 0.7 | 0.675142 |
Target: 5'- uGCGGCGACacuACgGCGGcuGCGACGCGGc -3' miRNA: 3'- -UGUCGUUGc--UGgCGUC--UGCUGCGCUa -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 39807 | 0.69 | 0.735766 |
Target: 5'- aACAgauGCGGCGACCGCuGGgcuCGGCuGCGAUg -3' miRNA: 3'- -UGU---CGUUGCUGGCGuCU---GCUG-CGCUA- -5' |
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11669 | 5' | -56.1 | NC_003102.1 | + | 87675 | 0.69 | 0.735766 |
Target: 5'- cCGGCGACGaaGCCGUcucguucauuAGACGAUGCGu- -3' miRNA: 3'- uGUCGUUGC--UGGCG----------UCUGCUGCGCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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