miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1167 3' -48.2 NC_001132.2 + 58113 0.67 0.999383
Target:  5'- ---cUACGUCGUcuagGGACGCGGu- -3'
miRNA:   3'- agaaAUGCAGCAuugaCCUGUGCCug -5'
1167 3' -48.2 NC_001132.2 + 154444 0.67 0.999064
Target:  5'- ----cACGUCGUcuccgaUGGcCGCGGACa -3'
miRNA:   3'- agaaaUGCAGCAuug---ACCuGUGCCUG- -5'
1167 3' -48.2 NC_001132.2 + 136270 0.67 0.998857
Target:  5'- gUCggUGCGUUgGUAAgUaGGACACGGuCg -3'
miRNA:   3'- -AGaaAUGCAG-CAUUgA-CCUGUGCCuG- -5'
1167 3' -48.2 NC_001132.2 + 160615 0.68 0.996619
Target:  5'- ----aGCGUC---GCUGGACAguCGGACg -3'
miRNA:   3'- agaaaUGCAGcauUGACCUGU--GCCUG- -5'
1167 3' -48.2 NC_001132.2 + 7656 0.69 0.993685
Target:  5'- ----gGCGUuuaCGaAAUUGGAUACGGACg -3'
miRNA:   3'- agaaaUGCA---GCaUUGACCUGUGCCUG- -5'
1167 3' -48.2 NC_001132.2 + 69664 0.7 0.990359
Target:  5'- ----gGCGUUGaAGCcGGACACGGAg -3'
miRNA:   3'- agaaaUGCAGCaUUGaCCUGUGCCUg -5'
1167 3' -48.2 NC_001132.2 + 141772 0.71 0.977085
Target:  5'- ----cACGUCGUuuguAACUGGACACcuccauuaaaaauGGACu -3'
miRNA:   3'- agaaaUGCAGCA----UUGACCUGUG-------------CCUG- -5'
1167 3' -48.2 NC_001132.2 + 30566 0.71 0.974738
Target:  5'- aCUUUGCGgag-GACuUGGACACGcGACa -3'
miRNA:   3'- aGAAAUGCagcaUUG-ACCUGUGC-CUG- -5'
1167 3' -48.2 NC_001132.2 + 136370 1.12 0.011898
Target:  5'- gUCUUUACGUCGUAACUGGACACGGACg -3'
miRNA:   3'- -AGAAAUGCAGCAUUGACCUGUGCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.