miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1167 5' -54.5 NC_001132.2 + 161745 0.66 0.94079
Target:  5'- ---cCCU---ACCUACCCugGACGUAc -3'
miRNA:   3'- gacaGGAcauUGGGUGGGugCUGCAU- -5'
1167 5' -54.5 NC_001132.2 + 136332 1.07 0.00541
Target:  5'- aCUGUCCUGUAACCCACCCACGACGUAu -3'
miRNA:   3'- -GACAGGACAUUGGGUGGGUGCUGCAU- -5'
1167 5' -54.5 NC_001132.2 + 45947 0.66 0.949702
Target:  5'- -cGUCgUGUAACCUugUCACGuuUGUGg -3'
miRNA:   3'- gaCAGgACAUUGGGugGGUGCu-GCAU- -5'
1167 5' -54.5 NC_001132.2 + 28878 0.67 0.925615
Target:  5'- aCUGUaCCUGUuugAACCCAaCCACGuguCGUu -3'
miRNA:   3'- -GACA-GGACA---UUGGGUgGGUGCu--GCAu -5'
1167 5' -54.5 NC_001132.2 + 1001 0.69 0.859545
Target:  5'- uUGUCCUucGUAcGCCUACCCucaaGGCGUGu -3'
miRNA:   3'- gACAGGA--CAU-UGGGUGGGug--CUGCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.