miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11670 3' -59.4 NC_003102.1 + 72340 1.11 0.001023
Target:  5'- aAGCGGCCCGACAUCUCAGCGUCGCGCu -3'
miRNA:   3'- -UCGCCGGGCUGUAGAGUCGCAGCGCG- -5'
11670 3' -59.4 NC_003102.1 + 94801 0.72 0.397806
Target:  5'- uAGCGGCCCucucggccGACGUUUCGGUcgcgggaacgguucGUCGUGUa -3'
miRNA:   3'- -UCGCCGGG--------CUGUAGAGUCG--------------CAGCGCG- -5'
11670 3' -59.4 NC_003102.1 + 15869 0.69 0.556338
Target:  5'- uGGCGaucGCgCGAC-UCgUCGGCGUCGCGa -3'
miRNA:   3'- -UCGC---CGgGCUGuAG-AGUCGCAGCGCg -5'
11670 3' -59.4 NC_003102.1 + 62009 0.69 0.575092
Target:  5'- cGGCGGCUcggguguuucaauCGGCGUUUCGGCccGUCGCu- -3'
miRNA:   3'- -UCGCCGG-------------GCUGUAGAGUCG--CAGCGcg -5'
11670 3' -59.4 NC_003102.1 + 64876 0.69 0.595983
Target:  5'- uGCGGCCCaucagaaauGGCAUgUCGaacGCGUCGcCGUu -3'
miRNA:   3'- uCGCCGGG---------CUGUAgAGU---CGCAGC-GCG- -5'
11670 3' -59.4 NC_003102.1 + 72456 0.67 0.676028
Target:  5'- cAGCGacguGCCCGACAcggugUUUCAGCcGUCGUuCg -3'
miRNA:   3'- -UCGC----CGGGCUGU-----AGAGUCG-CAGCGcG- -5'
11670 3' -59.4 NC_003102.1 + 114538 0.67 0.70569
Target:  5'- cGCGucucuaaCCGAUAUCUUGuaGUCGCGCg -3'
miRNA:   3'- uCGCcg-----GGCUGUAGAGUcgCAGCGCG- -5'
11670 3' -59.4 NC_003102.1 + 95973 0.67 0.725181
Target:  5'- cGCGGUCUGAUcaAUC-CGGCGUUGUa- -3'
miRNA:   3'- uCGCCGGGCUG--UAGaGUCGCAGCGcg -5'
11670 3' -59.4 NC_003102.1 + 133773 0.66 0.734816
Target:  5'- gAGCGuCUgagagacgagCGGCGUCUCAGCcGUCGCa- -3'
miRNA:   3'- -UCGCcGG----------GCUGUAGAGUCG-CAGCGcg -5'
11670 3' -59.4 NC_003102.1 + 17379 0.66 0.744365
Target:  5'- uGCcGCCCGuGCuGUUUagcGCGUCGCGCa -3'
miRNA:   3'- uCGcCGGGC-UG-UAGAgu-CGCAGCGCG- -5'
11670 3' -59.4 NC_003102.1 + 95538 0.66 0.772411
Target:  5'- ---cGCCCGA-AUCgaugccCAGCGUCGCGUu -3'
miRNA:   3'- ucgcCGGGCUgUAGa-----GUCGCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.