miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 76646 1.1 0.02008
Target:  5'- cAUACAAUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 112735 0.98 0.10005
Target:  5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 104682 0.98 0.10005
Target:  5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 104801 0.93 0.179454
Target:  5'- -cACAAUCAACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUUAGUUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103821 0.88 0.333687
Target:  5'- --uCAAUCuAUGAAGAGUCGGCCAGGu -3'
miRNA:   3'- uauGUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25806 0.87 0.36726
Target:  5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25886 0.87 0.36726
Target:  5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 76524 0.87 0.376008
Target:  5'- uGUACAuuaaaAUUuACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-----UAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 121637 0.87 0.393922
Target:  5'- cGUACAuGUCGAugacuuauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-UAGUU--------GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67220 0.86 0.412379
Target:  5'- uUACAuGUCGaugacuuauuACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU-UAGU----------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67135 0.86 0.431362
Target:  5'- cAUGuCGAUCGcuuauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAU-GUUAGUu----GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10564 0.84 0.491201
Target:  5'- aGUGau-UCAgcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUguuAGU--UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 89311 0.84 0.511997
Target:  5'- uUACAuguUUAaccACGAAAAGUCGGCCGGGu -3'
miRNA:   3'- uAUGUu--AGU---UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 112935 0.84 0.522532
Target:  5'- cUACAaaGUUuACGAAAAGUUGGCCAGGu -3'
miRNA:   3'- uAUGU--UAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 54422 0.83 0.587231
Target:  5'- gGUGCAauaacGUCAAaaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-----UAGUUgcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10395 0.83 0.587231
Target:  5'- uUAUAAUgAuaaguuggccucACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAgU------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26010 0.82 0.608084
Target:  5'- uUAgAGUUAaaguggcuuaagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUgUUAGU-------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103654 0.82 0.609184
Target:  5'- -cGCGGaCAcguuugagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUUaGU---------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103709 0.82 0.620195
Target:  5'- -gACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 103768 0.82 0.631216
Target:  5'- -aACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.