Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11672 | 3' | -46.6 | NC_003102.1 | + | 76646 | 1.1 | 0.02008 |
Target: 5'- cAUACAAUCAACGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGUUAGUUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112735 | 0.98 | 0.10005 |
Target: 5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104682 | 0.98 | 0.10005 |
Target: 5'- -aACAuGUCAACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104801 | 0.93 | 0.179454 |
Target: 5'- -cACAAUCAACaAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGUUAGUUGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103821 | 0.88 | 0.333687 |
Target: 5'- --uCAAUCuAUGAAGAGUCGGCCAGGu -3' miRNA: 3'- uauGUUAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 25806 | 0.87 | 0.36726 |
Target: 5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 25886 | 0.87 | 0.36726 |
Target: 5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 76524 | 0.87 | 0.376008 |
Target: 5'- uGUACAuuaaaAUUuACGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGU-----UAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 121637 | 0.87 | 0.393922 |
Target: 5'- cGUACAuGUCGAugacuuauCGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGU-UAGUU--------GCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 67220 | 0.86 | 0.412379 |
Target: 5'- uUACAuGUCGaugacuuauuACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uAUGU-UAGU----------UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 67135 | 0.86 | 0.431362 |
Target: 5'- cAUGuCGAUCGcuuauCGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAU-GUUAGUu----GCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 10564 | 0.84 | 0.491201 |
Target: 5'- aGUGau-UCAgcACGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUguuAGU--UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 89311 | 0.84 | 0.511997 |
Target: 5'- uUACAuguUUAaccACGAAAAGUCGGCCGGGu -3' miRNA: 3'- uAUGUu--AGU---UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112935 | 0.84 | 0.522532 |
Target: 5'- cUACAaaGUUuACGAAAAGUUGGCCAGGu -3' miRNA: 3'- uAUGU--UAGuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 54422 | 0.83 | 0.587231 |
Target: 5'- gGUGCAauaacGUCAAaaAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGU-----UAGUUgcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 10395 | 0.83 | 0.587231 |
Target: 5'- uUAUAAUgAuaaguuggccucACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uAUGUUAgU------------UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 26010 | 0.82 | 0.608084 |
Target: 5'- uUAgAGUUAaaguggcuuaagcACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uAUgUUAGU-------------UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103654 | 0.82 | 0.609184 |
Target: 5'- -cGCGGaCAcguuugagcACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGUUaGU---------UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103709 | 0.82 | 0.620195 |
Target: 5'- -gACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 103768 | 0.82 | 0.631216 |
Target: 5'- -aACAuGUCGAUGGucaaAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGU-UAGUUGCU----UUUCAGCCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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