miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 10395 0.83 0.587231
Target:  5'- uUAUAAUgAuaaguuggccucACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAgU------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10484 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10564 0.84 0.491201
Target:  5'- aGUGau-UCAgcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUguuAGU--UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10649 0.8 0.72919
Target:  5'- -gACuuaagC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuua--GuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 23233 0.7 0.992423
Target:  5'- gGUACAacgcGUCAAauucggcacCGuAAcAGUCGGCCAGGc -3'
miRNA:   3'- -UAUGU----UAGUU---------GC-UUuUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25806 0.87 0.36726
Target:  5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25886 0.87 0.36726
Target:  5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25939 0.74 0.946804
Target:  5'- -cGCGuuugaGACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUuag--UUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26010 0.82 0.608084
Target:  5'- uUAgAGUUAaaguggcuuaagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUgUUAGU-------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26013 0.72 0.980225
Target:  5'- ---aAGUCAcauguaaccuguuuACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaugUUAGU--------------UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 26100 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26155 0.73 0.970151
Target:  5'- -aACAuGUCGAUGAccaaAAAGUCGGCCAa- -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 26534 0.72 0.973175
Target:  5'- uUGCGucAUCuuucuCGAAAAGUCGGCCAc- -3'
miRNA:   3'- uAUGU--UAGuu---GCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 27859 0.75 0.907324
Target:  5'- -cGCAAUCGguGCGGAGAaUCGGgCCAGGc -3'
miRNA:   3'- uaUGUUAGU--UGCUUUUcAGCC-GGUCC- -5'
11672 3' -46.6 NC_003102.1 + 32065 0.71 0.991249
Target:  5'- -gGCAacgcAUCGACGuu--GUCGGCgAGGg -3'
miRNA:   3'- uaUGU----UAGUUGCuuuuCAGCCGgUCC- -5'
11672 3' -46.6 NC_003102.1 + 36067 0.67 0.999526
Target:  5'- uGUACA-----UGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUGUuaguuGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 36374 0.69 0.996559
Target:  5'- ---aAAUU-ACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 36711 0.66 0.99992
Target:  5'- -gGCGAUCAcacCGAuccGUCGGCCGu- -3'
miRNA:   3'- uaUGUUAGUu--GCUuuuCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 37130 0.67 0.999526
Target:  5'- uGUACGGaucuUCGGCGGucauGAGUCGGCUg-- -3'
miRNA:   3'- -UAUGUU----AGUUGCUu---UUCAGCCGGucc -5'
11672 3' -46.6 NC_003102.1 + 42729 0.74 0.946804
Target:  5'- -aACAuauUCA-CaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUu--AGUuGcUUUUCAGCCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.