miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 97728 0.74 0.951345
Target:  5'- -gACAGguuuguACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 10484 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26100 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10649 0.8 0.72919
Target:  5'- -gACuuaagC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuua--GuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 66934 0.79 0.759476
Target:  5'- aAUACAAaauuUUAuugugauAUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUU----AGU-------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 97675 0.75 0.919986
Target:  5'- -gACGuUC-ACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUuAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 61429 0.75 0.925903
Target:  5'- aGUAUAAUaaaauuuACGAAAAGUCuGCCAGGu -3'
miRNA:   3'- -UAUGUUAgu-----UGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25939 0.74 0.946804
Target:  5'- -cGCGuuugaGACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUuag--UUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 42729 0.74 0.946804
Target:  5'- -aACAuauUCA-CaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUu--AGUuGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67033 0.81 0.686131
Target:  5'- uUACAacacGUUAugaauauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU----UAGUu------GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 121730 0.81 0.675209
Target:  5'- --uUAAgu-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uauGUUaguUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26010 0.82 0.608084
Target:  5'- uUAgAGUUAaaguggcuuaagcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUgUUAGU-------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25886 0.87 0.36726
Target:  5'- ---uGAUC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 121637 0.87 0.393922
Target:  5'- cGUACAuGUCGAugacuuauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-UAGUU--------GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67220 0.86 0.412379
Target:  5'- uUACAuGUCGaugacuuauuACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU-UAGU----------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67135 0.86 0.431362
Target:  5'- cAUGuCGAUCGcuuauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAU-GUUAGUu----GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10564 0.84 0.491201
Target:  5'- aGUGau-UCAgcACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUguuAGU--UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 89311 0.84 0.511997
Target:  5'- uUACAuguUUAaccACGAAAAGUCGGCCGGGu -3'
miRNA:   3'- uAUGUu--AGU---UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10395 0.83 0.587231
Target:  5'- uUAUAAUgAuaaguuggccucACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAgU------------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 54422 0.83 0.587231
Target:  5'- gGUGCAauaacGUCAAaaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-----UAGUUgcUUUUCAGCCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.