miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 99463 0.71 0.989935
Target:  5'- -cACGAUCGACGAuccAGUC-GCCAGc -3'
miRNA:   3'- uaUGUUAGUUGCUuu-UCAGcCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 26013 0.72 0.980225
Target:  5'- ---aAGUCAcauguaaccuguuuACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaugUUAGU--------------UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 97841 0.72 0.978548
Target:  5'- -gACGGguuuguACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 26534 0.72 0.973175
Target:  5'- uUGCGucAUCuuucuCGAAAAGUCGGCCAc- -3'
miRNA:   3'- uAUGU--UAGuu---GCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 61547 0.72 0.973175
Target:  5'- gAUAUAuGUUuACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-UAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 56255 0.73 0.970151
Target:  5'- uGUAUGAUU--UGAcuaaAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGuuGCU----UUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26155 0.73 0.970151
Target:  5'- -aACAuGUCGAUGAccaaAAAGUCGGCCAa- -3'
miRNA:   3'- uaUGU-UAGUUGCU----UUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 96334 0.73 0.963387
Target:  5'- --cCGAUCAucaGAuu-GUCGGCCAGGu -3'
miRNA:   3'- uauGUUAGUug-CUuuuCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 97728 0.74 0.951345
Target:  5'- -gACAGguuuguACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 42729 0.74 0.946804
Target:  5'- -aACAuauUCA-CaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUu--AGUuGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 25939 0.74 0.946804
Target:  5'- -cGCGuuugaGACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGUuag--UUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 61429 0.75 0.925903
Target:  5'- aGUAUAAUaaaauuuACGAAAAGUCuGCCAGGu -3'
miRNA:   3'- -UAUGUUAgu-----UGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 97675 0.75 0.919986
Target:  5'- -gACGuUC-ACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUuAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 27859 0.75 0.907324
Target:  5'- -cGCAAUCGguGCGGAGAaUCGGgCCAGGc -3'
miRNA:   3'- uaUGUUAGU--UGCUUUUcAGCC-GGUCC- -5'
11672 3' -46.6 NC_003102.1 + 42829 0.76 0.878757
Target:  5'- -aACAuGUUAAUGAAAAGUCaGCCGGGu -3'
miRNA:   3'- uaUGU-UAGUUGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 66934 0.79 0.759476
Target:  5'- aAUACAAaauuUUAuugugauAUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUU----AGU-------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 104526 0.79 0.749143
Target:  5'- uGUGCAAUaauuGCGucaucuaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAgu--UGC-------UUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 10649 0.8 0.72919
Target:  5'- -gACuuaagC-ACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuua--GuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 56163 0.8 0.718543
Target:  5'- uUAUGAUUuauuuUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAGuu---GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 26100 0.8 0.70781
Target:  5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.