Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 3' | -46.1 | NC_003102.1 | + | 121680 | 0.83 | 0.571536 |
Target: 5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCA-CAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 137296 | 0.85 | 0.485561 |
Target: 5'- cAAACgUGUCUGACUUUUCGUGgacaugucUCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCAC--------AGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112702 | 0.86 | 0.444908 |
Target: 5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 112652 | 0.9 | 0.267287 |
Target: 5'- cGAACCUGUCUGACUUUUCGUGa--- -3' miRNA: 3'- aUUUGGACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 89642 | 1.1 | 0.018269 |
Target: 5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3' miRNA: 3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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