Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11673 | 5' | -43.3 | NC_003102.1 | + | 97730 | 0.82 | 0.829701 |
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Target: 5'- -cAGGUUugUACGAAAAGUCGGcCACGUu -3' miRNA: 3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 54624 | 0.83 | 0.780818 |
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Target: 5'- ---uGUUUGCuAAAAGUCGGACACGUu -3' miRNA: 3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 36181 | 0.83 | 0.780818 |
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Target: 5'- ---uGUUUGCuAAAAGUCGGACACGUu -3' miRNA: 3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 56055 | 0.85 | 0.716928 |
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Target: 5'- ---uGUUUACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAAAUGCUUUUCAGcCUGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 25998 | 0.86 | 0.638531 |
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Target: 5'- ---uGUUUACGAAAAGUCGGcCACGUu -3' miRNA: 3'- auuuCAAAUGCUUUUCAGCCuGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 103627 | 0.87 | 0.604609 |
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Target: 5'- ---uGUUcACGAAAAGUCGGACGCGUu -3' miRNA: 3'- auuuCAAaUGCUUUUCAGCCUGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 76445 | 0.92 | 0.385142 |
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Target: 5'- gUAAAGUUUAUGAAAAGUCGGcCACGUu -3' miRNA: 3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 104602 | 0.92 | 0.376017 |
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Target: 5'- aUAAAGUUUAUGAAAAGUCGGcCACGUu -3' miRNA: 3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5' |
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| 11673 | 5' | -43.3 | NC_003102.1 | + | 89606 | 1.07 | 0.065667 |
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Target: 5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3' miRNA: 3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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