miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11675 5' -56.5 NC_003102.1 + 133856 0.7 0.604638
Target:  5'- uGGAGUgauggacagCGACGaCGCgGCCGaGCUGCAu -3'
miRNA:   3'- -UCUCAa--------GCUGC-GCG-CGGUaCGACGUu -5'
11675 5' -56.5 NC_003102.1 + 115338 0.68 0.748737
Target:  5'- cGAGUUacACGaGCGCCGUGUUGCu- -3'
miRNA:   3'- uCUCAAgcUGCgCGCGGUACGACGuu -5'
11675 5' -56.5 NC_003102.1 + 14161 0.67 0.777794
Target:  5'- cGAGUcUCGugGCG-GCgGUuGCUGCAc -3'
miRNA:   3'- uCUCA-AGCugCGCgCGgUA-CGACGUu -5'
11675 5' -56.5 NC_003102.1 + 121106 0.67 0.777794
Target:  5'- uGAugUCGGCGaCGaCGCCGUGCgGCAu -3'
miRNA:   3'- uCUcaAGCUGC-GC-GCGGUACGaCGUu -5'
11675 5' -56.5 NC_003102.1 + 4408 0.66 0.823379
Target:  5'- cGGGUUCGACGgGCuGCUgaucaucgaGCUGCGGu -3'
miRNA:   3'- uCUCAAGCUGCgCG-CGGua-------CGACGUU- -5'
11675 5' -56.5 NC_003102.1 + 4165 0.7 0.615071
Target:  5'- aAGAGUUgGACGUGCGCgaCAUaaaGUUGCAu -3'
miRNA:   3'- -UCUCAAgCUGCGCGCG--GUA---CGACGUu -5'
11675 5' -56.5 NC_003102.1 + 99510 1.06 0.003155
Target:  5'- aAGAGUUCGACGCGCGCCAUGCUGCAAc -3'
miRNA:   3'- -UCUCAAGCUGCGCGCGGUACGACGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.