miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11677 5' -50 NC_003102.1 + 10685 0.66 0.997017
Target:  5'- aGCCaugucuacgaaAAGUCaGACACGUUCaaaucaaaccUGGCCGa -3'
miRNA:   3'- -CGGg----------UUUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 10765 0.68 0.983474
Target:  5'- aCCCGAcuacgaaaaGUCaGACACGUUCgauucgaaccUGGCCGa -3'
miRNA:   3'- cGGGUU---------UAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 16566 0.66 0.995152
Target:  5'- cGCCCGucgucguAUUUGAUAauUUCacaauUAGCCGCg -3'
miRNA:   3'- -CGGGUu------UAGACUGUgcAAG-----AUCGGCG- -5'
11677 5' -50 NC_003102.1 + 21029 0.67 0.99345
Target:  5'- cCCCAAGUCgacucGGCucGCGUUCUAGaCGa -3'
miRNA:   3'- cGGGUUUAGa----CUG--UGCAAGAUCgGCg -5'
11677 5' -50 NC_003102.1 + 23881 0.67 0.988627
Target:  5'- aGCCC------GACACuGUUCUcGGCCGCu -3'
miRNA:   3'- -CGGGuuuagaCUGUG-CAAGA-UCGGCG- -5'
11677 5' -50 NC_003102.1 + 24084 0.78 0.60624
Target:  5'- uGUgCAAAUUaGACACGgccaaUCUAGCCGCa -3'
miRNA:   3'- -CGgGUUUAGaCUGUGCa----AGAUCGGCG- -5'
11677 5' -50 NC_003102.1 + 26088 0.67 0.993824
Target:  5'- uGCUCAAacgcgucuacaaaaaGUCaGACACGUUCagaucaaaccUGGCCGa -3'
miRNA:   3'- -CGGGUU---------------UAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 26366 0.68 0.987713
Target:  5'- aGUCCAAacauguuaacgaaaaGUCaGACACGUUCaaaucgaauuUGGCCGa -3'
miRNA:   3'- -CGGGUU---------------UAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 26741 0.7 0.957515
Target:  5'- cGUCCAcgaaaAGUCaGACACGUUCgaaucgaacgUGGCCGa -3'
miRNA:   3'- -CGGGU-----UUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 30851 0.7 0.953492
Target:  5'- uGCCCAcaaauGUCaacgaUGACGCGUUCgccgAGCUagGCa -3'
miRNA:   3'- -CGGGUu----UAG-----ACUGUGCAAGa---UCGG--CG- -5'
11677 5' -50 NC_003102.1 + 36185 0.66 0.996476
Target:  5'- uGCUaaAAGUCgGACACGUUCaaaucgaaccUGGCCGa -3'
miRNA:   3'- -CGGg-UUUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 36712 0.66 0.995857
Target:  5'- uCCCu--UCUGGC-CGUguauGCCGCa -3'
miRNA:   3'- cGGGuuuAGACUGuGCAagauCGGCG- -5'
11677 5' -50 NC_003102.1 + 47322 0.68 0.981413
Target:  5'- cGCCCAAGuuUCUGaACACGaucgauauaUUCUuGUCGUg -3'
miRNA:   3'- -CGGGUUU--AGAC-UGUGC---------AAGAuCGGCG- -5'
11677 5' -50 NC_003102.1 + 54290 0.69 0.976722
Target:  5'- uGCaaAAGUCgGACACGUUCaaaucaacuUGGCCGa -3'
miRNA:   3'- -CGggUUUAGaCUGUGCAAG---------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 54620 0.66 0.996476
Target:  5'- uGCUaaAAGUCgGACACGUUCaaaucgaaccUGGCCGa -3'
miRNA:   3'- -CGGg-UUUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 63263 0.73 0.862495
Target:  5'- aCUCGAGUUUGACACGaucgaUCUGGaCCGUg -3'
miRNA:   3'- cGGGUUUAGACUGUGCa----AGAUC-GGCG- -5'
11677 5' -50 NC_003102.1 + 67334 0.66 0.996476
Target:  5'- uGCaaaAAGUCaGACACGUUCgaaucgaaccUGGCCGa -3'
miRNA:   3'- -CGgg-UUUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 67424 0.66 0.996476
Target:  5'- uGCaaaAAGUCaGACACGUUCgaaucgaaccUGGCCGa -3'
miRNA:   3'- -CGgg-UUUAGaCUGUGCAAG----------AUCGGCg -5'
11677 5' -50 NC_003102.1 + 72174 0.68 0.987072
Target:  5'- aGCgCGAcgCUGAgAUGUcg-GGCCGCu -3'
miRNA:   3'- -CGgGUUuaGACUgUGCAagaUCGGCG- -5'
11677 5' -50 NC_003102.1 + 72297 0.67 0.988627
Target:  5'- -aCCGuGUCgGGCACGUcgCU-GCCGCc -3'
miRNA:   3'- cgGGUuUAGaCUGUGCAa-GAuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.