miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11678 3' -49.5 NC_003102.1 + 119070 0.71 0.913599
Target:  5'- gUCGUGAUCGcGguGGCGU--GCUGUUg -3'
miRNA:   3'- aAGCGUUAGC-CguCUGCAuuUGACAG- -5'
11678 3' -49.5 NC_003102.1 + 53547 0.69 0.962946
Target:  5'- cUUCGUAGUCGGCAGGCucgcGGAC-GUUg -3'
miRNA:   3'- -AAGCGUUAGCCGUCUGca--UUUGaCAG- -5'
11678 3' -49.5 NC_003102.1 + 46351 0.66 0.995007
Target:  5'- gUCGacuUCGGaGGACGU--GCUGUCu -3'
miRNA:   3'- aAGCguuAGCCgUCUGCAuuUGACAG- -5'
11678 3' -49.5 NC_003102.1 + 92593 0.66 0.995007
Target:  5'- aUgGCGAUCGGCugguuuGugGUGAACg--- -3'
miRNA:   3'- aAgCGUUAGCCGu-----CugCAUUUGacag -5'
11678 3' -49.5 NC_003102.1 + 93413 0.66 0.996389
Target:  5'- -aCGUAAUUGGCGGGgaacaGUAgaAACUGUUc -3'
miRNA:   3'- aaGCGUUAGCCGUCUg----CAU--UUGACAG- -5'
11678 3' -49.5 NC_003102.1 + 18473 0.66 0.993222
Target:  5'- aUCGCGAcggCGGCAGGuuCGUcgGC-GUCg -3'
miRNA:   3'- aAGCGUUa--GCCGUCU--GCAuuUGaCAG- -5'
11678 3' -49.5 NC_003102.1 + 23709 0.67 0.988142
Target:  5'- gUUCGagugUGGCGGGCGUAGGCggcgcGUCc -3'
miRNA:   3'- -AAGCguuaGCCGUCUGCAUUUGa----CAG- -5'
11678 3' -49.5 NC_003102.1 + 106146 1.08 0.010951
Target:  5'- aUUCGCAAUCGGCAGACGUAAACUGUCu -3'
miRNA:   3'- -AAGCGUUAGCCGUCUGCAUUUGACAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.