miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11678 5' -58.6 NC_003102.1 + 133770 0.71 0.532427
Target:  5'- gUCGAgCGUCuGAgagacgagcGGCGUCUcagCCGUCGCAa -3'
miRNA:   3'- -AGCU-GCAG-CU---------CCGCAGGa--GGCAGCGU- -5'
11678 5' -58.6 NC_003102.1 + 58651 0.67 0.767049
Target:  5'- gUCGuCGUCGA--CGUCg-CCGUCGCAg -3'
miRNA:   3'- -AGCuGCAGCUccGCAGgaGGCAGCGU- -5'
11678 5' -58.6 NC_003102.1 + 73323 0.67 0.767049
Target:  5'- gUCGuCGUCGucGuCGUCCUCguCGUCGUc -3'
miRNA:   3'- -AGCuGCAGCucC-GCAGGAG--GCAGCGu -5'
11678 5' -58.6 NC_003102.1 + 130886 0.69 0.640939
Target:  5'- gUUGGCGUUGGcGCGUCCUaugcaaGUCGCGu -3'
miRNA:   3'- -AGCUGCAGCUcCGCAGGAgg----CAGCGU- -5'
11678 5' -58.6 NC_003102.1 + 93416 0.69 0.640939
Target:  5'- gUCGACgGUCGAGGCGagagcgCCG-CGCAa -3'
miRNA:   3'- -AGCUG-CAGCUCCGCagga--GGCaGCGU- -5'
11678 5' -58.6 NC_003102.1 + 63575 0.71 0.542091
Target:  5'- aUCGACG-CGGGaGCGgcUCCUCCGuaaUCGUAu -3'
miRNA:   3'- -AGCUGCaGCUC-CGC--AGGAGGC---AGCGU- -5'
11678 5' -58.6 NC_003102.1 + 81556 0.67 0.77619
Target:  5'- gUCGAaGUCGAcGCGgUCgCCGUCGCAg -3'
miRNA:   3'- -AGCUgCAGCUcCGCaGGaGGCAGCGU- -5'
11678 5' -58.6 NC_003102.1 + 110363 0.69 0.650902
Target:  5'- aCGAucaUGUCGAcGGCGugUCCgCUGUCGCAg -3'
miRNA:   3'- aGCU---GCAGCU-CCGC--AGGaGGCAGCGU- -5'
11678 5' -58.6 NC_003102.1 + 120532 0.75 0.313212
Target:  5'- aUCGACGUCGugcuuuAGaCGUCCUCCGUacaGCAu -3'
miRNA:   3'- -AGCUGCAGC------UCcGCAGGAGGCAg--CGU- -5'
11678 5' -58.6 NC_003102.1 + 106109 1.09 0.001954
Target:  5'- aUCGACGUCGAGGCGUCCUCCGUCGCAu -3'
miRNA:   3'- -AGCUGCAGCUCCGCAGGAGGCAGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.