miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 87603 0.75 0.286452
Target:  5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5'
11680 3' -59 NC_003102.1 + 31544 0.76 0.240581
Target:  5'- -cGACGUCACCGCUuCUACCGCC-CCu -3'
miRNA:   3'- aaUUGCGGUGGUGGcGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 92262 0.76 0.240581
Target:  5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3'
miRNA:   3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 89865 0.76 0.223804
Target:  5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3'
miRNA:   3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 49154 0.76 0.229283
Target:  5'- cUGACuCCAUUACCgauGCCGCCGCCGCUg -3'
miRNA:   3'- aAUUGcGGUGGUGG---CGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 15705 0.77 0.213179
Target:  5'- -cGACGCCgacgagucgcGCgAUCGCCAUUGCCACCa -3'
miRNA:   3'- aaUUGCGG----------UGgUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 129022 0.77 0.218436
Target:  5'- -cGGCGCCgGCCGCCGCUACuCGuCCugCg -3'
miRNA:   3'- aaUUGCGG-UGGUGGCGGUG-GC-GGugG- -5'
11680 3' -59 NC_003102.1 + 6697 0.78 0.170604
Target:  5'- cUGAUGCUGCCGauggUGCCGCUGCCGCCg -3'
miRNA:   3'- aAUUGCGGUGGUg---GCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 21059 0.78 0.166373
Target:  5'- -aGACgGCCGuCCgaaauGCUGCCACCGCCGCCc -3'
miRNA:   3'- aaUUG-CGGU-GG-----UGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 16632 0.79 0.16388
Target:  5'- -aAugGCCGCCgguuugaccuguuggACCGCCGCCGCgACUg -3'
miRNA:   3'- aaUugCGGUGG---------------UGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 33267 0.79 0.146603
Target:  5'- -cAACGCCGugcagUCGCCGCCGCCGCCGa- -3'
miRNA:   3'- aaUUGCGGU-----GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 1831 0.79 0.146603
Target:  5'- ---cUGCCGacacaaauuUUACCGCCGCCGCCACCa -3'
miRNA:   3'- aauuGCGGU---------GGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 71475 0.8 0.12572
Target:  5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 59348 0.81 0.119394
Target:  5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 128951 0.82 0.09199
Target:  5'- ----gGCCGCCGCCGCUACC-CCGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 113170 0.82 0.094437
Target:  5'- ---cCGCCACCGCCGacaccaCCACCGCCACg -3'
miRNA:   3'- aauuGCGGUGGUGGC------GGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 46018 0.82 0.09199
Target:  5'- ----aGCCGCCGCCGCCGCUGCCucuucuaucGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGCGG---------UGG- -5'
11680 3' -59 NC_003102.1 + 111568 0.83 0.080634
Target:  5'- -cGGCGUCAUCAUCGCCACCGCUaaACCa -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGG--UGG- -5'
11680 3' -59 NC_003102.1 + 45984 0.84 0.066964
Target:  5'- --cACGaUACCACCGCCGCCGCCAUCa -3'
miRNA:   3'- aauUGCgGUGGUGGCGGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.