miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 5' -54.5 NC_003102.1 + 120844 0.66 0.95057
Target:  5'- uUGuGGCGCuCGcCCGUGAUcggAUCGaUGGCGc -3'
miRNA:   3'- -AC-CUGUG-GC-GGCACUGa--UAGC-AUCGC- -5'
11680 5' -54.5 NC_003102.1 + 116691 0.66 0.946274
Target:  5'- uUGGGCGaaGCCGUGACggUGUCGa---- -3'
miRNA:   3'- -ACCUGUggCGGCACUG--AUAGCaucgc -5'
11680 5' -54.5 NC_003102.1 + 50274 0.66 0.941738
Target:  5'- cGGuccCAUCGCCGUGGCcAUUGauuGCGu -3'
miRNA:   3'- aCCu--GUGGCGGCACUGaUAGCau-CGC- -5'
11680 5' -54.5 NC_003102.1 + 72376 0.66 0.92668
Target:  5'- cGGGCGCCGagaaCGUGAgCggaggcagCGUAGCc -3'
miRNA:   3'- aCCUGUGGCg---GCACU-Gaua-----GCAUCGc -5'
11680 5' -54.5 NC_003102.1 + 18770 0.67 0.921173
Target:  5'- gUGGACGCCGCUGuUGuACgaGUUGUGGaCa -3'
miRNA:   3'- -ACCUGUGGCGGC-AC-UGa-UAGCAUC-Gc -5'
11680 5' -54.5 NC_003102.1 + 110144 0.67 0.896722
Target:  5'- gGGACGCCGCCG-GGCca-UGUGGa- -3'
miRNA:   3'- aCCUGUGGCGGCaCUGauaGCAUCgc -5'
11680 5' -54.5 NC_003102.1 + 6616 0.69 0.845077
Target:  5'- cUGG-CGCUGCCGaGACUGcCGcUGGCGu -3'
miRNA:   3'- -ACCuGUGGCGGCaCUGAUaGC-AUCGC- -5'
11680 5' -54.5 NC_003102.1 + 110201 0.71 0.75534
Target:  5'- cGGACA-CGCCGUcGACaugAUCGUGGaCGc -3'
miRNA:   3'- aCCUGUgGCGGCA-CUGa--UAGCAUC-GC- -5'
11680 5' -54.5 NC_003102.1 + 59745 0.73 0.64422
Target:  5'- cGGACGCCGCCG--AC-GUUGUAGCc -3'
miRNA:   3'- aCCUGUGGCGGCacUGaUAGCAUCGc -5'
11680 5' -54.5 NC_003102.1 + 129218 0.73 0.633882
Target:  5'- cGaGACAUCGCCGa---UGUCGUGGCGg -3'
miRNA:   3'- aC-CUGUGGCGGCacugAUAGCAUCGC- -5'
11680 5' -54.5 NC_003102.1 + 16611 0.74 0.560895
Target:  5'- uUGGAcCGCCGCCGcGACUgcggagaAUCGcGGCGa -3'
miRNA:   3'- -ACCU-GUGGCGGCaCUGA-------UAGCaUCGC- -5'
11680 5' -54.5 NC_003102.1 + 120788 0.74 0.551774
Target:  5'- aGGACACCGCagaCGcgGAC-AUUGUGGCGa -3'
miRNA:   3'- aCCUGUGGCG---GCa-CUGaUAGCAUCGC- -5'
11680 5' -54.5 NC_003102.1 + 115119 1.09 0.00406
Target:  5'- uUGGACACCGCCGUGACUAUCGUAGCGu -3'
miRNA:   3'- -ACCUGUGGCGGCACUGAUAGCAUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.