Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11680 | 5' | -54.5 | NC_003102.1 | + | 120844 | 0.66 | 0.95057 |
Target: 5'- uUGuGGCGCuCGcCCGUGAUcggAUCGaUGGCGc -3' miRNA: 3'- -AC-CUGUG-GC-GGCACUGa--UAGC-AUCGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 116691 | 0.66 | 0.946274 |
Target: 5'- uUGGGCGaaGCCGUGACggUGUCGa---- -3' miRNA: 3'- -ACCUGUggCGGCACUG--AUAGCaucgc -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 50274 | 0.66 | 0.941738 |
Target: 5'- cGGuccCAUCGCCGUGGCcAUUGauuGCGu -3' miRNA: 3'- aCCu--GUGGCGGCACUGaUAGCau-CGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 72376 | 0.66 | 0.92668 |
Target: 5'- cGGGCGCCGagaaCGUGAgCggaggcagCGUAGCc -3' miRNA: 3'- aCCUGUGGCg---GCACU-Gaua-----GCAUCGc -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 18770 | 0.67 | 0.921173 |
Target: 5'- gUGGACGCCGCUGuUGuACgaGUUGUGGaCa -3' miRNA: 3'- -ACCUGUGGCGGC-AC-UGa-UAGCAUC-Gc -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 110144 | 0.67 | 0.896722 |
Target: 5'- gGGACGCCGCCG-GGCca-UGUGGa- -3' miRNA: 3'- aCCUGUGGCGGCaCUGauaGCAUCgc -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 6616 | 0.69 | 0.845077 |
Target: 5'- cUGG-CGCUGCCGaGACUGcCGcUGGCGu -3' miRNA: 3'- -ACCuGUGGCGGCaCUGAUaGC-AUCGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 110201 | 0.71 | 0.75534 |
Target: 5'- cGGACA-CGCCGUcGACaugAUCGUGGaCGc -3' miRNA: 3'- aCCUGUgGCGGCA-CUGa--UAGCAUC-GC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 59745 | 0.73 | 0.64422 |
Target: 5'- cGGACGCCGCCG--AC-GUUGUAGCc -3' miRNA: 3'- aCCUGUGGCGGCacUGaUAGCAUCGc -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 129218 | 0.73 | 0.633882 |
Target: 5'- cGaGACAUCGCCGa---UGUCGUGGCGg -3' miRNA: 3'- aC-CUGUGGCGGCacugAUAGCAUCGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 16611 | 0.74 | 0.560895 |
Target: 5'- uUGGAcCGCCGCCGcGACUgcggagaAUCGcGGCGa -3' miRNA: 3'- -ACCU-GUGGCGGCaCUGA-------UAGCaUCGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 120788 | 0.74 | 0.551774 |
Target: 5'- aGGACACCGCagaCGcgGAC-AUUGUGGCGa -3' miRNA: 3'- aCCUGUGGCG---GCa-CUGaUAGCAUCGC- -5' |
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11680 | 5' | -54.5 | NC_003102.1 | + | 115119 | 1.09 | 0.00406 |
Target: 5'- uUGGACACCGCCGUGACUAUCGUAGCGu -3' miRNA: 3'- -ACCUGUGGCGGCACUGAUAGCAUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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