Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11681 | 3' | -53.8 | NC_003102.1 | + | 62993 | 0.71 | 0.731859 |
Target: 5'- --cGACAUUGccgaauuGAAACGCGagaCGGGCAg -3' miRNA: 3'- cuaCUGUAAC-------CUUUGCGCg--GCCCGUa -5' |
|||||||
11681 | 3' | -53.8 | NC_003102.1 | + | 132044 | 1.05 | 0.006 |
Target: 5'- cGAUGACAUUGGAAACGCGCCGGGCAUc -3' miRNA: 3'- -CUACUGUAACCUUUGCGCGGCCCGUA- -5' |
|||||||
11681 | 3' | -53.8 | NC_003102.1 | + | 6662 | 0.69 | 0.819323 |
Target: 5'- uGGUGACGUUGGcguuGGCGuUGCCGcuGGCGUu -3' miRNA: 3'- -CUACUGUAACCu---UUGC-GCGGC--CCGUA- -5' |
|||||||
11681 | 3' | -53.8 | NC_003102.1 | + | 6602 | 0.68 | 0.845197 |
Target: 5'- uGGUGACGUUGGcgcuGGCGCuGCCGagacugccgcuGGCGUu -3' miRNA: 3'- -CUACUGUAACCu---UUGCG-CGGC-----------CCGUA- -5' |
|||||||
11681 | 3' | -53.8 | NC_003102.1 | + | 18011 | 0.67 | 0.910919 |
Target: 5'- cGUGuuGCaAUUGGAAaaguuguauACGUGUCGGGCGUg -3' miRNA: 3'- cUAC--UG-UAACCUU---------UGCGCGGCCCGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home