miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 132313 0.66 1
Target:  5'- uUUgAACAuGUUCAUGAACuUGUUgGAc -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGuACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 132346 0.71 0.999599
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132358 1.01 0.125979
Target:  5'- gUCAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- aGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132394 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132424 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132478 1.09 0.045474
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132522 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132585 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132625 0.87 0.595744
Target:  5'- gUCUAACAAGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132655 0.68 0.999989
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132709 0.75 0.988405
Target:  5'- gUCUAACAuGUUCAUaaAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUuCAAGUAc-UUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132749 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132789 0.83 0.785739
Target:  5'- gUCCAACAuGUUaAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAgUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132800 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132819 0.87 0.584321
Target:  5'- -aUAACAGGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- agGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132832 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132853 0.86 0.63017
Target:  5'- gUCUAACAGGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132883 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132933 0.86 0.618678
Target:  5'- gUCUAACAGGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132965 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.