miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 137733 0.67 0.999997
Target:  5'- --gAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36248 0.67 0.999997
Target:  5'- gUCaGACAGGUUCGaauUGAACGUGgcCGAc -3'
miRNA:   3'- -AGgUUGUUCAAGU---ACUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 54869 0.66 0.999999
Target:  5'- gUCUAACAuGUUCAUaacCAUGUUCGc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcuuGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 126942 0.66 1
Target:  5'- uUCCGAgGAc--UAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUgUUcaaGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 139070 0.66 1
Target:  5'- aUCaAACAuGaUUAUGAACAUGUUCGc -3'
miRNA:   3'- -AGgUUGUuCaAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 18394 0.66 1
Target:  5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3'
miRNA:   3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5'
11682 5' -43.1 NC_003102.1 + 103961 0.66 1
Target:  5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3'
miRNA:   3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55502 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132883 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 96037 0.71 0.99949
Target:  5'- gUUCGGCGGcGgcacCGUGAACAUGUUCAAc -3'
miRNA:   3'- -AGGUUGUU-Caa--GUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 118283 0.7 0.999687
Target:  5'- gUCC-ACAugcuGUUCGUGAACAcgcauccgaUGUUCGAu -3'
miRNA:   3'- -AGGuUGUu---CAAGUACUUGU---------ACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 69744 0.7 0.999687
Target:  5'- uUCCGaaACAcGUUCAuaaccguguUGGACAUGUUCGu -3'
miRNA:   3'- -AGGU--UGUuCAAGU---------ACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 26792 0.7 0.999687
Target:  5'- --gAACAuGUUCGUGGACAUGUUgAGc -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 55438 0.69 0.99992
Target:  5'- -aUAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- agGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36094 0.69 0.99992
Target:  5'- aUCGAguGGUUCAUGAugAUGaUCAc -3'
miRNA:   3'- aGGUUguUCAAGUACUugUACaAGUu -5'
11682 5' -43.1 NC_003102.1 + 137814 0.69 0.999941
Target:  5'- --aGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133590 0.69 0.999968
Target:  5'- gUCCGACAcaaAGUUgacggCAUuGACGUGUUCGAa -3'
miRNA:   3'- -AGGUUGU---UCAA-----GUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 12459 0.69 0.999968
Target:  5'- aCCGAUGAGcaccgUCAUcAACAUGUUCGGa -3'
miRNA:   3'- aGGUUGUUCa----AGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137910 0.68 0.999984
Target:  5'- --aAACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132655 0.68 0.999989
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.