miRNA display CGI


Results 81 - 100 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 18394 0.66 1
Target:  5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3'
miRNA:   3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5'
11682 5' -43.1 NC_003102.1 + 103961 0.66 1
Target:  5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3'
miRNA:   3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133590 0.69 0.999968
Target:  5'- gUCCGACAcaaAGUUgacggCAUuGACGUGUUCGAa -3'
miRNA:   3'- -AGGUUGU---UCAA-----GUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137814 0.69 0.999941
Target:  5'- --aGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 54909 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133186 0.77 0.968926
Target:  5'- gUCUAACAAGUUUAUaAACAUGUUUAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132709 0.75 0.988405
Target:  5'- gUCUAACAuGUUCAUaaAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUuCAAGUAc-UUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55656 0.74 0.992518
Target:  5'- -gCAGCGA-UUUAUGAACAUGUUCAc -3'
miRNA:   3'- agGUUGUUcAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132424 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132305 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 103783 0.73 0.996101
Target:  5'- gUCCGACuu-UUCGUGAACAUG-UCGAu -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACaAGUU- -5'
11682 5' -43.1 NC_003102.1 + 10465 0.72 0.998758
Target:  5'- -aCGAC-GGUUCAUGAACAUGUa--- -3'
miRNA:   3'- agGUUGuUCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 26957 0.72 0.998995
Target:  5'- gUCCAAC-GGUUCAaucaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGuUCAAGUac--UUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137869 0.71 0.99949
Target:  5'- uUCauaGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- -AGg--UUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 96037 0.71 0.99949
Target:  5'- gUUCGGCGGcGgcacCGUGAACAUGUUCAAc -3'
miRNA:   3'- -AGGUUGUU-Caa--GUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 118283 0.7 0.999687
Target:  5'- gUCC-ACAugcuGUUCGUGAACAcgcauccgaUGUUCGAu -3'
miRNA:   3'- -AGGuUGUu---CAAGUACUUGU---------ACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 69744 0.7 0.999687
Target:  5'- uUCCGaaACAcGUUCAuaaccguguUGGACAUGUUCGu -3'
miRNA:   3'- -AGGU--UGUuCAAGU---------ACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 26792 0.7 0.999687
Target:  5'- --gAACAuGUUCGUGGACAUGUUgAGc -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 55438 0.69 0.99992
Target:  5'- -aUAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- agGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36094 0.69 0.99992
Target:  5'- aUCGAguGGUUCAUGAugAUGaUCAc -3'
miRNA:   3'- aGGUUguUCAAGUACUugUACaAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.