Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11682 | 5' | -43.1 | NC_003102.1 | + | 137572 | 0.73 | 0.996101 |
Target: 5'- aUgAACAuGUUUAUGAACAUGUUCu- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAGuu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 54662 | 0.74 | 0.994543 |
Target: 5'- gUCCAACuuuua-GUGAACAUGUUCAu -3' miRNA: 3'- -AGGUUGuucaagUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137747 | 0.77 | 0.968926 |
Target: 5'- cUCgAACAuGUUUAUGAACAUGUUUAu -3' miRNA: 3'- -AGgUUGUuCAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137860 | 0.81 | 0.852984 |
Target: 5'- gCCuauaAACAuGUUCAUGAACAUGUUCAu -3' miRNA: 3'- aGG----UUGUuCAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 42459 | 0.87 | 0.584321 |
Target: 5'- gUCCAACuu-UUCAUGAACAUGUUCAAa -3' miRNA: 3'- -AGGUUGuucAAGUACUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 26909 | 0.7 | 0.999893 |
Target: 5'- gUgAACAuGUUUGUGAACAUGUUUAu -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132101 | 0.69 | 0.999968 |
Target: 5'- --aGACuu-UUCGUGAACAUGUUCAu -3' miRNA: 3'- aggUUGuucAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 55327 | 0.66 | 1 |
Target: 5'- gUUgGACuu-UUCGUGAACAUGUUUAu -3' miRNA: 3'- -AGgUUGuucAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132313 | 0.66 | 1 |
Target: 5'- uUUgAACAuGUUCAUGAACuUGUUgGAc -3' miRNA: 3'- -AGgUUGUuCAAGUACUUGuACAAgUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132832 | 0.67 | 0.999996 |
Target: 5'- gUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132800 | 0.67 | 0.999996 |
Target: 5'- gUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132585 | 0.67 | 0.999996 |
Target: 5'- gUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 54956 | 0.67 | 0.999996 |
Target: 5'- gUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 54745 | 0.67 | 0.999996 |
Target: 5'- gUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 55275 | 0.67 | 0.999995 |
Target: 5'- aUgAACAuGUUUAUGAACAUGUUa-- -3' miRNA: 3'- aGgUUGUuCAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 105254 | 0.68 | 0.999992 |
Target: 5'- cUCCAAagucguaauAGaUUCAUcGAACAUGUUCGAu -3' miRNA: 3'- -AGGUUgu-------UC-AAGUA-CUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132219 | 0.68 | 0.999989 |
Target: 5'- aCUuACuu-UUCGUGAACAUGUUCAu -3' miRNA: 3'- aGGuUGuucAAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 120527 | 0.68 | 0.999989 |
Target: 5'- cUCCAAU--GUUCGUcGAACAUGUccUCAu -3' miRNA: 3'- -AGGUUGuuCAAGUA-CUUGUACA--AGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 26782 | 0.68 | 0.999984 |
Target: 5'- --aAACAuGUUUGUGAACAUGUUUGAu -3' miRNA: 3'- aggUUGUuCAAGUACUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137652 | 0.68 | 0.999977 |
Target: 5'- cUCgAACAuGUUUAUGAACAUGUc--- -3' miRNA: 3'- -AGgUUGUuCAAGUACUUGUACAaguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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