miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11683 3' -63.8 NC_003102.1 + 6874 0.66 0.556218
Target:  5'- gCGCCaACaCCGGCGGcaGCGGCAccauCGGCa -3'
miRNA:   3'- -GCGGcUGcGGCCGCC--CGUCGU----GCUGc -5'
11683 3' -63.8 NC_003102.1 + 17479 0.69 0.413331
Target:  5'- gCGUCGGCGgguaugucgaUGGCGGGCAcgccGCACGAuCGg -3'
miRNA:   3'- -GCGGCUGCg---------GCCGCCCGU----CGUGCU-GC- -5'
11683 3' -63.8 NC_003102.1 + 17730 0.74 0.205302
Target:  5'- gCGgCGGCGgCGGCGgcGGCGGCGgCGGCGg -3'
miRNA:   3'- -GCgGCUGCgGCCGC--CCGUCGU-GCUGC- -5'
11683 3' -63.8 NC_003102.1 + 19716 0.73 0.235923
Target:  5'- -aUCGGCGUCGGCGGcG-AGCAUGACGg -3'
miRNA:   3'- gcGGCUGCGGCCGCC-CgUCGUGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 20879 0.66 0.584862
Target:  5'- aGUCGACuuggGgCGGCGguGGCAGCAUuucgGACGg -3'
miRNA:   3'- gCGGCUG----CgGCCGC--CCGUCGUG----CUGC- -5'
11683 3' -63.8 NC_003102.1 + 31442 0.67 0.50032
Target:  5'- uGCCagcgaauauuaGACGCUgcuGGuCGGGCGGCACGcCu -3'
miRNA:   3'- gCGG-----------CUGCGG---CC-GCCCGUCGUGCuGc -5'
11683 3' -63.8 NC_003102.1 + 33098 0.74 0.195886
Target:  5'- uGUCGGCGgCGGCGGcGaCuGCACGGCGu -3'
miRNA:   3'- gCGGCUGCgGCCGCC-C-GuCGUGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 37875 0.66 0.546757
Target:  5'- gGgCGGCGgCGGCGgcGGCGGUgaugAUGACGa -3'
miRNA:   3'- gCgGCUGCgGCCGC--CCGUCG----UGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 49011 0.66 0.565726
Target:  5'- aG-CGACG-CGGC-GGCGGCgACGGCGg -3'
miRNA:   3'- gCgGCUGCgGCCGcCCGUCG-UGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 57930 0.66 0.556218
Target:  5'- cCGCCGuCGaaGGUauauucuuuucGGGCAGCuuuGCGGCa -3'
miRNA:   3'- -GCGGCuGCggCCG-----------CCCGUCG---UGCUGc -5'
11683 3' -63.8 NC_003102.1 + 59751 0.72 0.277004
Target:  5'- cCGCCGACGuuguagccuuuuguuCCGucauguucguacguGUGGGCAGCgACGGCGg -3'
miRNA:   3'- -GCGGCUGC---------------GGC--------------CGCCCGUCG-UGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 63063 0.68 0.447043
Target:  5'- gGUCGACGCgagacacgaucuCGGC-GGCGGCACGGu- -3'
miRNA:   3'- gCGGCUGCG------------GCCGcCCGUCGUGCUgc -5'
11683 3' -63.8 NC_003102.1 + 87437 0.68 0.455708
Target:  5'- uCGaUCGACGUCGGCGacggcGGUGGCACcGACu -3'
miRNA:   3'- -GC-GGCUGCGGCCGC-----CCGUCGUG-CUGc -5'
11683 3' -63.8 NC_003102.1 + 93484 0.69 0.37347
Target:  5'- aCGUCGGCGUCGGUGGGaacguaCACGAUc -3'
miRNA:   3'- -GCGGCUGCGGCCGCCCguc---GUGCUGc -5'
11683 3' -63.8 NC_003102.1 + 102125 0.66 0.537347
Target:  5'- uCGUCGAauUCGGCa-GCAGCGCGAUGa -3'
miRNA:   3'- -GCGGCUgcGGCCGccCGUCGUGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 112999 0.66 0.584862
Target:  5'- uCGUCGugGCgguggugguguCGGCGguGGCGGCAgUGACa -3'
miRNA:   3'- -GCGGCugCG-----------GCCGC--CCGUCGU-GCUGc -5'
11683 3' -63.8 NC_003102.1 + 117239 0.69 0.413331
Target:  5'- aCGCgCG-CGCC-GCGGGCuuugacGCACGACc -3'
miRNA:   3'- -GCG-GCuGCGGcCGCCCGu-----CGUGCUGc -5'
11683 3' -63.8 NC_003102.1 + 129093 0.69 0.413331
Target:  5'- gGCCGACGCaGGaCcGGCAGUaauuguagccgGCGACGu -3'
miRNA:   3'- gCGGCUGCGgCC-GcCCGUCG-----------UGCUGC- -5'
11683 3' -63.8 NC_003102.1 + 129123 0.71 0.308561
Target:  5'- aGCgGcaGCuGCCGGCgGGGUAGCGgCGGCGg -3'
miRNA:   3'- gCGgC--UG-CGGCCG-CCCGUCGU-GCUGC- -5'
11683 3' -63.8 NC_003102.1 + 129171 0.75 0.173984
Target:  5'- gGCCGGCGCCGaCGGaGCAGUA-GACGc -3'
miRNA:   3'- gCGGCUGCGGCcGCC-CGUCGUgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.