miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11685 5' -49.6 NC_003102.1 + 127404 0.68 0.986994
Target:  5'- -aCGAcgGcgGCCGAgaaUGggUGAUCGACg -3'
miRNA:   3'- uaGCUuaC--UGGCUa--GCuuACUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 96506 0.66 0.997019
Target:  5'- cUCGAuucuaaccUGGCCGAcaaUCuGAUGAUCGGCg -3'
miRNA:   3'- uAGCUu-------ACUGGCU---AGcUUACUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 90585 0.7 0.957107
Target:  5'- cUUGGAUGcCCGaAUCGAacgugGUGAUCGACu -3'
miRNA:   3'- uAGCUUACuGGC-UAGCU-----UACUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 74792 0.66 0.996476
Target:  5'- gAUCGGgcacGUGACCacuUCGGAUG-CCGAa -3'
miRNA:   3'- -UAGCU----UACUGGcu-AGCUUACuGGCUg -5'
11685 5' -49.6 NC_003102.1 + 67312 0.71 0.939298
Target:  5'- aAUCGAAccUGGCCGAcuuuUCGAuaagcGAUCGACa -3'
miRNA:   3'- -UAGCUU--ACUGGCU----AGCUua---CUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 63262 0.7 0.96451
Target:  5'- cUCGAGuuUGACaCGAUCGAucugGACCGuGCc -3'
miRNA:   3'- uAGCUU--ACUG-GCUAGCUua--CUGGC-UG- -5'
11685 5' -49.6 NC_003102.1 + 42486 0.71 0.939298
Target:  5'- -cCGggUGugCccguGAUCGAGUgGGCCGAUa -3'
miRNA:   3'- uaGCuuACugG----CUAGCUUA-CUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 36838 0.76 0.730443
Target:  5'- uUCGGAggaucUGACCGAaUGGAUGGCCGAg -3'
miRNA:   3'- uAGCUU-----ACUGGCUaGCUUACUGGCUg -5'
11685 5' -49.6 NC_003102.1 + 27500 0.7 0.957107
Target:  5'- cUCGAccaacuuggacAUGGCCGAUCGGuugGACgCGAUc -3'
miRNA:   3'- uAGCU-----------UACUGGCUAGCUua-CUG-GCUG- -5'
11685 5' -49.6 NC_003102.1 + 24191 0.68 0.98336
Target:  5'- uAUCGAuauguAUGAagCGAUCGAuccaaaGACCGGCg -3'
miRNA:   3'- -UAGCU-----UACUg-GCUAGCUua----CUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 24126 0.66 0.996476
Target:  5'- aGUCgGAAUGAUCGAUgGucAUGGCCG-Cu -3'
miRNA:   3'- -UAG-CUUACUGGCUAgCu-UACUGGCuG- -5'
11685 5' -49.6 NC_003102.1 + 21296 0.67 0.993333
Target:  5'- cAUCGccgccGACCGAUCGAgAUGguaacauGCCGGCu -3'
miRNA:   3'- -UAGCuua--CUGGCUAGCU-UAC-------UGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 15003 1.08 0.013664
Target:  5'- gAUCGAAUGACCGAUCGAAUGACCGACc -3'
miRNA:   3'- -UAGCUUACUGGCUAGCUUACUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 14941 0.73 0.850402
Target:  5'- uUCGc--GACCGAUCGAAUgaugaucaaucagaGACCGACc -3'
miRNA:   3'- uAGCuuaCUGGCUAGCUUA--------------CUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 12681 0.7 0.948714
Target:  5'- cUCG-GUGACCGuUCGAAuuuUGuCCGACg -3'
miRNA:   3'- uAGCuUACUGGCuAGCUU---ACuGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 9559 0.68 0.988565
Target:  5'- uUCGAGUcGGgCGAUCGuugagcgGACCGAUc -3'
miRNA:   3'- uAGCUUA-CUgGCUAGCuua----CUGGCUG- -5'
11685 5' -49.6 NC_003102.1 + 5579 0.71 0.944136
Target:  5'- uUCGAuUGua-GGUCGAgAUGACCGACg -3'
miRNA:   3'- uAGCUuACuggCUAGCU-UACUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.