Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 71483 | 0.74 | 0.536327 |
|
Target: 5'- cCGCCGUUGCCGCCucuGUCGcuAUCggaauuuacauuuauGGCCAg -3' miRNA: 3'- -GCGGUAACGGUGG---UAGCu-UAG---------------CCGGU- -5' |
|||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 82482 | 0.68 | 0.855458 |
|
Target: 5'- aCGCUGUUGCucUugC-UCGAAUCGGCgGa -3' miRNA: 3'- -GCGGUAACG--GugGuAGCUUAGCCGgU- -5' |
|||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 88955 | 0.66 | 0.911593 |
|
Target: 5'- gGUCAgaGCCGCguuguuuUCGGAUCGGUCGa -3' miRNA: 3'- gCGGUaaCGGUGgu-----AGCUUAGCCGGU- -5' |
|||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 113753 | 0.69 | 0.799019 |
|
Target: 5'- gGCUAUUcgaauuauuugagcgGCCGCCAcgUCGAuUCGGUCGa -3' miRNA: 3'- gCGGUAA---------------CGGUGGU--AGCUuAGCCGGU- -5' |
|||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 119479 | 0.71 | 0.707604 |
|
Target: 5'- aCGCCAccggcGCCGCCGUUug--CGGCCAa -3' miRNA: 3'- -GCGGUaa---CGGUGGUAGcuuaGCCGGU- -5' |
|||||||
| 11686 | 3' | -54.7 | NC_003102.1 | + | 132158 | 0.67 | 0.898963 |
|
Target: 5'- gGCCAUUGCUugaGUCGcuUCGGCg- -3' miRNA: 3'- gCGGUAACGGuggUAGCuuAGCCGgu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home