Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11687 | 3' | -54.2 | NC_003102.1 | + | 20467 | 0.67 | 0.920482 |
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Target: 5'- --cUCGUCGUCGACAGUaGUauaGCGCg- -3' miRNA: 3'- gcaAGCGGCGGCUGUUA-CAg--UGCGau -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 19553 | 0.72 | 0.660708 |
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Target: 5'- cCGUcaugcUCGCCGCCGACGccgAUGUCauuACGUa- -3' miRNA: 3'- -GCA-----AGCGGCGGCUGU---UACAG---UGCGau -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 18491 | 0.8 | 0.293534 |
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Target: 5'- aGggCGCCGUCGACGAUGuUCGCGCc- -3' miRNA: 3'- gCaaGCGGCGGCUGUUAC-AGUGCGau -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 16731 | 1.07 | 0.005058 |
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Target: 5'- uCGUUCGCCGCCGACAAUGUCACGCUAg -3' miRNA: 3'- -GCAAGCGGCGGCUGUUACAGUGCGAU- -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 15896 | 0.67 | 0.914049 |
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Target: 5'- uGUUCGUgGCCGAuuCGAUGguggcaauggcgaUCGCGCg- -3' miRNA: 3'- gCAAGCGgCGGCU--GUUAC-------------AGUGCGau -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 15699 | 0.73 | 0.598162 |
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Target: 5'- aCG-UCGCgaCGCCGACGA-GUCGCGCg- -3' miRNA: 3'- -GCaAGCG--GCGGCUGUUaCAGUGCGau -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 14804 | 0.66 | 0.945938 |
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Target: 5'- aCGaUCGCaCGCCGGCGuuuuacgaacugAUGgcgCugGCUGu -3' miRNA: 3'- -GCaAGCG-GCGGCUGU------------UACa--GugCGAU- -5' |
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| 11687 | 3' | -54.2 | NC_003102.1 | + | 6711 | 0.67 | 0.908563 |
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Target: 5'- gGUgcCGCUGCCGcCGGUGUUGgCGCUGc -3' miRNA: 3'- gCAa-GCGGCGGCuGUUACAGU-GCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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