miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11687 5' -50.8 NC_003102.1 + 15284 0.69 0.941842
Target:  5'- gUgAACAcgGUAcaUUCGGUGCUGAGCg -3'
miRNA:   3'- aAgUUGUa-CAUaaGAGCCGCGGCUCG- -5'
11687 5' -50.8 NC_003102.1 + 16779 1.11 0.005554
Target:  5'- uUUCAACAUGUAUUCUCGGCGCCGAGCa -3'
miRNA:   3'- -AAGUUGUACAUAAGAGCCGCGGCUCG- -5'
11687 5' -50.8 NC_003102.1 + 16957 0.73 0.785236
Target:  5'- -gCAAUcgGUcuagugCUCGGCGCCGAGa -3'
miRNA:   3'- aaGUUGuaCAuaa---GAGCCGCGGCUCg -5'
11687 5' -50.8 NC_003102.1 + 41431 0.69 0.951009
Target:  5'- gUCAACGU----UUUCGuCGCCGAGCg -3'
miRNA:   3'- aAGUUGUAcauaAGAGCcGCGGCUCG- -5'
11687 5' -50.8 NC_003102.1 + 47122 0.66 0.984424
Target:  5'- cUCAACAUGUAcaUUCUCuGCGgCaauAGCa -3'
miRNA:   3'- aAGUUGUACAU--AAGAGcCGCgGc--UCG- -5'
11687 5' -50.8 NC_003102.1 + 70577 0.69 0.934804
Target:  5'- gUCAGC-UGgcgcgcuucguugAUUCUcaugcCGGUGCCGAGCa -3'
miRNA:   3'- aAGUUGuACa------------UAAGA-----GCCGCGGCUCG- -5'
11687 5' -50.8 NC_003102.1 + 72214 0.69 0.931629
Target:  5'- cUCcGCucacGUUCUCGGCGCcCGAGUu -3'
miRNA:   3'- aAGuUGuacaUAAGAGCCGCG-GCUCG- -5'
11687 5' -50.8 NC_003102.1 + 121025 0.66 0.990713
Target:  5'- aUCuACA-GUAcggaaUCUCGGUGuuGGGCa -3'
miRNA:   3'- aAGuUGUaCAUa----AGAGCCGCggCUCG- -5'
11687 5' -50.8 NC_003102.1 + 122404 0.66 0.990713
Target:  5'- cUCAGCAgcagGUAgcUUCGaGCGCauuuaaGAGCg -3'
miRNA:   3'- aAGUUGUa---CAUaaGAGC-CGCGg-----CUCG- -5'
11687 5' -50.8 NC_003102.1 + 123399 0.7 0.908034
Target:  5'- cUCGGCgGUGUAcguUUCacCGGCGUCGAGUg -3'
miRNA:   3'- aAGUUG-UACAU---AAGa-GCCGCGGCUCG- -5'
11687 5' -50.8 NC_003102.1 + 130308 0.67 0.975328
Target:  5'- -aCAAUuUGUcUUCuUCGGCGCCGccGCa -3'
miRNA:   3'- aaGUUGuACAuAAG-AGCCGCGGCu-CG- -5'
11687 5' -50.8 NC_003102.1 + 136098 0.7 0.92036
Target:  5'- -aCGACAuauuguuguuuUGUGUUCgauaaugaGGCGUCGGGCa -3'
miRNA:   3'- aaGUUGU-----------ACAUAAGag------CCGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.