miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11688 3' -60.7 NC_003102.1 + 34215 0.66 0.666349
Target:  5'- aAUGG-GUGCCCGUCUUGAugcguuuucCCUGUa-- -3'
miRNA:   3'- -UGCCgCACGGGCAGAGCU---------GGACGcug -5'
11688 3' -60.7 NC_003102.1 + 93580 0.66 0.686098
Target:  5'- cGCGGCGcuCUCGcCUCGACC-GuCGACg -3'
miRNA:   3'- -UGCCGCacGGGCaGAGCUGGaC-GCUG- -5'
11688 3' -60.7 NC_003102.1 + 100915 0.67 0.642516
Target:  5'- gACGGCGgcucggugaucugGCCCagGUCUCGuuCUGCGu- -3'
miRNA:   3'- -UGCCGCa------------CGGG--CAGAGCugGACGCug -5'
11688 3' -60.7 NC_003102.1 + 64144 0.67 0.656431
Target:  5'- cUGGuCGUGCCCgGUCUCagcgGAUUcggaUGCGACa -3'
miRNA:   3'- uGCC-GCACGGG-CAGAG----CUGG----ACGCUG- -5'
11688 3' -60.7 NC_003102.1 + 81368 0.67 0.656431
Target:  5'- -gGGCGUGCUcaacgacgcguCGUCUgCGACg-GCGACc -3'
miRNA:   3'- ugCCGCACGG-----------GCAGA-GCUGgaCGCUG- -5'
11688 3' -60.7 NC_003102.1 + 48991 0.68 0.566239
Target:  5'- gGCGGCGaaacGCCCGUUcaccaucgauccgUCauGACCaGCGACg -3'
miRNA:   3'- -UGCCGCa---CGGGCAG-------------AG--CUGGaCGCUG- -5'
11688 3' -60.7 NC_003102.1 + 17306 0.73 0.29039
Target:  5'- uGCGGCGUGCCCGcCaUCGACauacccGcCGACg -3'
miRNA:   3'- -UGCCGCACGGGCaG-AGCUGga----C-GCUG- -5'
11688 3' -60.7 NC_003102.1 + 23136 1.08 0.001202
Target:  5'- uACGGCGUGCCCGUCUCGACCUGCGACu -3'
miRNA:   3'- -UGCCGCACGGGCAGAGCUGGACGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.