miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11688 5' -51.3 NC_003102.1 + 133761 0.66 0.986825
Target:  5'- gUCGCCGCAgucgagcGUCUGAGagacGAGCGg -3'
miRNA:   3'- -AGCGGUGUau-----CAGACUCgca-CUUGUg -5'
11688 5' -51.3 NC_003102.1 + 118303 0.67 0.974747
Target:  5'- cUCGCCACAU-GUUUGgauaguagacgggauGGCGUGcgacGGCGCc -3'
miRNA:   3'- -AGCGGUGUAuCAGAC---------------UCGCAC----UUGUG- -5'
11688 5' -51.3 NC_003102.1 + 29570 0.67 0.970754
Target:  5'- cCGCCACAUcGUCgGcGuCGUGAAUAUu -3'
miRNA:   3'- aGCGGUGUAuCAGaCuC-GCACUUGUG- -5'
11688 5' -51.3 NC_003102.1 + 42081 0.68 0.964294
Target:  5'- gUCGCCGCAUAuuuuGUagaaugGAGCGUGuACGg -3'
miRNA:   3'- -AGCGGUGUAU----CAga----CUCGCACuUGUg -5'
11688 5' -51.3 NC_003102.1 + 118285 0.68 0.964294
Target:  5'- aCGuCCACAUG--CUGuuCGUGAACACg -3'
miRNA:   3'- aGC-GGUGUAUcaGACucGCACUUGUG- -5'
11688 5' -51.3 NC_003102.1 + 17472 0.68 0.956896
Target:  5'- aCGUCgACAUuucAGaUCUGAuCGUGAACACg -3'
miRNA:   3'- aGCGG-UGUA---UC-AGACUcGCACUUGUG- -5'
11688 5' -51.3 NC_003102.1 + 39375 0.68 0.952831
Target:  5'- aCGCCACA-AGUUUGAuCGagacgGAACGCa -3'
miRNA:   3'- aGCGGUGUaUCAGACUcGCa----CUUGUG- -5'
11688 5' -51.3 NC_003102.1 + 109901 0.71 0.853063
Target:  5'- aCGgUAUcgAGUCUGAGCGUGuucuuCACu -3'
miRNA:   3'- aGCgGUGuaUCAGACUCGCACuu---GUG- -5'
11688 5' -51.3 NC_003102.1 + 23173 1.11 0.004786
Target:  5'- cUCGCCACAUAGUCUGAGCGUGAACACg -3'
miRNA:   3'- -AGCGGUGUAUCAGACUCGCACUUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.