Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11688 | 5' | -51.3 | NC_003102.1 | + | 23173 | 1.11 | 0.004786 |
Target: 5'- cUCGCCACAUAGUCUGAGCGUGAACACg -3' miRNA: 3'- -AGCGGUGUAUCAGACUCGCACUUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 109901 | 0.71 | 0.853063 |
Target: 5'- aCGgUAUcgAGUCUGAGCGUGuucuuCACu -3' miRNA: 3'- aGCgGUGuaUCAGACUCGCACuu---GUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 39375 | 0.68 | 0.952831 |
Target: 5'- aCGCCACA-AGUUUGAuCGagacgGAACGCa -3' miRNA: 3'- aGCGGUGUaUCAGACUcGCa----CUUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 17472 | 0.68 | 0.956896 |
Target: 5'- aCGUCgACAUuucAGaUCUGAuCGUGAACACg -3' miRNA: 3'- aGCGG-UGUA---UC-AGACUcGCACUUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 42081 | 0.68 | 0.964294 |
Target: 5'- gUCGCCGCAUAuuuuGUagaaugGAGCGUGuACGg -3' miRNA: 3'- -AGCGGUGUAU----CAga----CUCGCACuUGUg -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 118285 | 0.68 | 0.964294 |
Target: 5'- aCGuCCACAUG--CUGuuCGUGAACACg -3' miRNA: 3'- aGC-GGUGUAUcaGACucGCACUUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 118303 | 0.67 | 0.974747 |
Target: 5'- cUCGCCACAU-GUUUGgauaguagacgggauGGCGUGcgacGGCGCc -3' miRNA: 3'- -AGCGGUGUAuCAGAC---------------UCGCAC----UUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 29570 | 0.67 | 0.970754 |
Target: 5'- cCGCCACAUcGUCgGcGuCGUGAAUAUu -3' miRNA: 3'- aGCGGUGUAuCAGaCuC-GCACUUGUG- -5' |
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11688 | 5' | -51.3 | NC_003102.1 | + | 133761 | 0.66 | 0.986825 |
Target: 5'- gUCGCCGCAgucgagcGUCUGAGagacGAGCGg -3' miRNA: 3'- -AGCGGUGUau-----CAGACUCgca-CUUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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