miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11689 5' -60.6 NC_003102.1 + 29498 1.02 0.002201
Target:  5'- uUUGCCGUCCAGACGGCACACCGCCAUu -3'
miRNA:   3'- -AACGGCAGGUCUGCCGUGUGGCGGUA- -5'
11689 5' -60.6 NC_003102.1 + 110130 0.77 0.141439
Target:  5'- gUGCCGgCCGGAuCGGgACGCCGCCGg -3'
miRNA:   3'- aACGGCaGGUCU-GCCgUGUGGCGGUa -5'
11689 5' -60.6 NC_003102.1 + 29654 0.75 0.206287
Target:  5'- gUGCCGUCUGGACGGCAaacugUACaUGCCGUa -3'
miRNA:   3'- aACGGCAGGUCUGCCGU-----GUG-GCGGUA- -5'
11689 5' -60.6 NC_003102.1 + 36814 0.7 0.402967
Target:  5'- -gGCCGa--GGACGGCACACaCGCCc- -3'
miRNA:   3'- aaCGGCaggUCUGCCGUGUG-GCGGua -5'
11689 5' -60.6 NC_003102.1 + 113201 0.69 0.444276
Target:  5'- aUGCUGUCCAcGuuuuCGGCAauugucacugccgcCACCGCCGa -3'
miRNA:   3'- aACGGCAGGU-Cu---GCCGU--------------GUGGCGGUa -5'
11689 5' -60.6 NC_003102.1 + 128935 0.69 0.465338
Target:  5'- cUGCCgGUCCugcGuCGGC-CGCCGCCGc -3'
miRNA:   3'- aACGG-CAGGu--CuGCCGuGUGGCGGUa -5'
11689 5' -60.6 NC_003102.1 + 99386 0.68 0.493567
Target:  5'- aUGCCGUCgAGACGcuuCAUUGCCAUa -3'
miRNA:   3'- aACGGCAGgUCUGCcguGUGGCGGUA- -5'
11689 5' -60.6 NC_003102.1 + 31423 0.67 0.542239
Target:  5'- cUGCUGgUCGGGCGGCACGCCuuccuuguccGCUAUu -3'
miRNA:   3'- aACGGCaGGUCUGCCGUGUGG----------CGGUA- -5'
11689 5' -60.6 NC_003102.1 + 75860 0.66 0.602539
Target:  5'- -cGUCGUCgGuGACGGC--GCCGCCGa -3'
miRNA:   3'- aaCGGCAGgU-CUGCCGugUGGCGGUa -5'
11689 5' -60.6 NC_003102.1 + 21055 0.66 0.633072
Target:  5'- -gGCCGUCCGaaauGCuGC-CACCGCCGc -3'
miRNA:   3'- aaCGGCAGGUc---UGcCGuGUGGCGGUa -5'
11689 5' -60.6 NC_003102.1 + 31469 0.66 0.633072
Target:  5'- -cGCCGgCCAGACaGCAgCugUGCUAUg -3'
miRNA:   3'- aaCGGCaGGUCUGcCGU-GugGCGGUA- -5'
11689 5' -60.6 NC_003102.1 + 23299 0.66 0.643258
Target:  5'- -cGCagGUCgAGACgGGCACGCCGUaCAUg -3'
miRNA:   3'- aaCGg-CAGgUCUG-CCGUGUGGCG-GUA- -5'
11689 5' -60.6 NC_003102.1 + 33264 0.66 0.653436
Target:  5'- -cGCCGUgCAGuCGccGC-CGCCGCCGa -3'
miRNA:   3'- aaCGGCAgGUCuGC--CGuGUGGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.