Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 126160 | 0.66 | 0.793005 |
|
Target: 5'- -aUGGCGGCgCGACCG-UGAucaaguuuauaACGGGUc -3' miRNA: 3'- agGCUGCCGaGCUGGCcACU-----------UGCCCA- -5' |
|||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 1726 | 0.66 | 0.784131 |
|
Target: 5'- -gUGAUGGUUCGAUCGGUGGcuccgGCaGGa -3' miRNA: 3'- agGCUGCCGAGCUGGCCACU-----UGcCCa -5' |
|||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 41146 | 0.66 | 0.766006 |
|
Target: 5'- aCgGAUGGCgCGAUCGGUGGuguACGGu- -3' miRNA: 3'- aGgCUGCCGaGCUGGCCACU---UGCCca -5' |
|||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 48819 | 0.68 | 0.640253 |
|
Target: 5'- -aUGACGGaUCGA-UGGUGAACGGGc -3' miRNA: 3'- agGCUGCCgAGCUgGCCACUUGCCCa -5' |
|||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 42219 | 0.74 | 0.327806 |
|
Target: 5'- gCCGACGGCU-GuuCGGUGAGCGcGGa -3' miRNA: 3'- aGGCUGCCGAgCugGCCACUUGC-CCa -5' |
|||||||
| 11690 | 3' | -59.3 | NC_003102.1 | + | 41019 | 1.07 | 0.002219 |
|
Target: 5'- gUCCGACGGCUCGACCGGUGAACGGGUu -3' miRNA: 3'- -AGGCUGCCGAGCUGGCCACUUGCCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home