miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11691 5' -44.8 NC_003102.1 + 79118 0.66 0.999994
Target:  5'- aUGAGAauGUUUUCGaGCCGAGUUGAUg- -3'
miRNA:   3'- -AUUUU--UAAGAGCcUGGCUUAGCUGuu -5'
11691 5' -44.8 NC_003102.1 + 86095 0.66 0.999994
Target:  5'- -----uUUCUagGGACCGGAcuuuUCGACAc -3'
miRNA:   3'- auuuuuAAGAg-CCUGGCUU----AGCUGUu -5'
11691 5' -44.8 NC_003102.1 + 54199 0.66 0.999994
Target:  5'- ------aUgUCGGA-CGGAUCGACGAg -3'
miRNA:   3'- auuuuuaAgAGCCUgGCUUAGCUGUU- -5'
11691 5' -44.8 NC_003102.1 + 62330 0.66 0.999988
Target:  5'- aUGGAAAUUCgacaUCaGGCCGAGaUCGAUAGa -3'
miRNA:   3'- -AUUUUUAAG----AGcCUGGCUU-AGCUGUU- -5'
11691 5' -44.8 NC_003102.1 + 118015 0.67 0.99994
Target:  5'- gGAAAGUggacaagUCGGACaCGAucAUCGACAAu -3'
miRNA:   3'- aUUUUUAag-----AGCCUG-GCU--UAGCUGUU- -5'
11691 5' -44.8 NC_003102.1 + 113555 0.68 0.999893
Target:  5'- cGAAAAgaCUCuagucgucGACCGAAUCGACGu -3'
miRNA:   3'- aUUUUUaaGAGc-------CUGGCUUAGCUGUu -5'
11691 5' -44.8 NC_003102.1 + 83136 0.68 0.999762
Target:  5'- cAAAAAUguaaUCGGACCGAucaaacuuGUCGuACAAa -3'
miRNA:   3'- aUUUUUAag--AGCCUGGCU--------UAGC-UGUU- -5'
11691 5' -44.8 NC_003102.1 + 113903 0.7 0.999031
Target:  5'- gGAGAGUa--CGGACCGAAUgGACGc -3'
miRNA:   3'- aUUUUUAagaGCCUGGCUUAgCUGUu -5'
11691 5' -44.8 NC_003102.1 + 41656 0.71 0.9974
Target:  5'- uUGGAAAUUUUUcGACgGAGUCGACAu -3'
miRNA:   3'- -AUUUUUAAGAGcCUGgCUUAGCUGUu -5'
11691 5' -44.8 NC_003102.1 + 31081 0.73 0.985693
Target:  5'- cGAGAAUguugcggacguaUCUCGuGACCGGAUCGAUc- -3'
miRNA:   3'- aUUUUUA------------AGAGC-CUGGCUUAGCUGuu -5'
11691 5' -44.8 NC_003102.1 + 41288 0.74 0.979213
Target:  5'- ------gUCUCGGaACCGuAGUCGACGAc -3'
miRNA:   3'- auuuuuaAGAGCC-UGGC-UUAGCUGUU- -5'
11691 5' -44.8 NC_003102.1 + 101389 0.75 0.967483
Target:  5'- -cAAAGUUUUCgggcaacgGGACCGGAUCGACGc -3'
miRNA:   3'- auUUUUAAGAG--------CCUGGCUUAGCUGUu -5'
11691 5' -44.8 NC_003102.1 + 21048 0.81 0.755122
Target:  5'- ------aUCUCGcGACCGAAUCGGCGAc -3'
miRNA:   3'- auuuuuaAGAGC-CUGGCUUAGCUGUU- -5'
11691 5' -44.8 NC_003102.1 + 41523 1.06 0.046976
Target:  5'- uUAAAAAUUCUCGGACCGAAUCGACAAa -3'
miRNA:   3'- -AUUUUUAAGAGCCUGGCUUAGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.