Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11692 | 3' | -42.1 | NC_003102.1 | + | 42564 | 0.72 | 0.999687 |
Target: 5'- --aAUGUUCAcGAAAAGUCAGaCAAGu -3' miRNA: 3'- uugUACAAGUaUUUUUCAGUCcGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 55138 | 0.72 | 0.99935 |
Target: 5'- aAACAUGUUCAUGAAAAGUCuaaCAu- -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUuc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 138026 | 0.72 | 0.999486 |
Target: 5'- gAACAUGUUCAUGAAcauGUUuauAGGCAu- -3' miRNA: 3'- -UUGUACAAGUAUUUuu-CAG---UCCGUuc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 111343 | 0.74 | 0.997208 |
Target: 5'- cGGCAUGUaCGUAAuaauGUCGGGCAAu -3' miRNA: 3'- -UUGUACAaGUAUUuuu-CAGUCCGUUc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 132539 | 0.74 | 0.997689 |
Target: 5'- aAACAUGUUUAUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 42830 | 0.74 | 0.998098 |
Target: 5'- aAACAUGUUaAUGAAAAGUCAGcCGGGu -3' miRNA: 3'- -UUGUACAAgUAUUUUUCAGUCcGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 55919 | 0.74 | 0.998098 |
Target: 5'- cAAUAUGUUCGUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 112707 | 0.76 | 0.986249 |
Target: 5'- uAACAUGUUUAUGAAAAGUCAGa---- -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGUCcguuc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 103622 | 0.76 | 0.992285 |
Target: 5'- cGACAUGUUCAcGAAAAGUCGGacGCGu- -3' miRNA: 3'- -UUGUACAAGUaUUUUUCAGUC--CGUuc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 54726 | 0.77 | 0.982117 |
Target: 5'- -uCAUGUUCAUGAAAAGUCAuaCAAGu -3' miRNA: 3'- uuGUACAAGUAUUUUUCAGUccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 104233 | 0.77 | 0.977116 |
Target: 5'- cAACGUGUUCAUAAAAAGUCAacaguaauGCAAa -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGUc-------CGUUc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 26974 | 0.77 | 0.984286 |
Target: 5'- aAACAUGUUCAUGAAAAGUCcaacGGUu-- -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGu---CCGuuc -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 55425 | 0.77 | 0.979731 |
Target: 5'- aAACAUGUUCAUAAAAAGUCcaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 112732 | 0.78 | 0.964153 |
Target: 5'- gAACAUGUUUAUGAAAAGUCAuaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGUccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 55813 | 0.79 | 0.951552 |
Target: 5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 132411 | 0.79 | 0.951552 |
Target: 5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 132642 | 0.79 | 0.951552 |
Target: 5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 132292 | 0.79 | 0.951552 |
Target: 5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3' miRNA: 3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 42508 | 0.8 | 0.93058 |
Target: 5'- uACAUGUUCaAUGAAAAGUCAG-CAAGu -3' miRNA: 3'- uUGUACAAG-UAUUUUUCAGUCcGUUC- -5' |
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11692 | 3' | -42.1 | NC_003102.1 | + | 10849 | 0.8 | 0.936281 |
Target: 5'- aAACA-GUUCAUGAAAAGUCAGaCAAGu -3' miRNA: 3'- -UUGUaCAAGUAUUUUUCAGUCcGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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