miRNA display CGI

Results 61 - 65 of 65 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11692	5'	-46.2	NC_003102.1	+	112472	0.8	0.703884
	Target:  5'- gAACCUGGCUGACUUUUCAUa------ -3' miRNA:   3'- -UUGGGCCGACUGAAAAGUAauuguac -5'
11692	5'	-46.2	NC_003102.1	+	89482	0.84	0.515364
	Target:  5'- aAACCCGGCcGACUUUUCGUgguuaAACAUGu -3' miRNA:   3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5'
11692	5'	-46.2	NC_003102.1	+	112569	0.92	0.208763
	Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3' miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692	5'	-46.2	NC_003102.1	+	104516	0.92	0.208763
	Target:  5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3' miRNA:   3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5'
11692	5'	-46.2	NC_003102.1	+	42663	1.07	0.027268
	Target:  5'- gAACCCGGCUGACUUUUCAUUAACAUGu -3' miRNA:   3'- -UUGGGCCGACUGAAAAGUAAUUGUAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home