miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11696 5' -55.6 NC_003102.1 + 134386 0.66 0.920849
Target:  5'- gCGGCGGCGGUCgcaagaauuuggCGCCGCcg--GCGGa -3'
miRNA:   3'- -GCUGCUGUCGGa-----------GCGGCGucuaUGUC- -5'
11696 5' -55.6 NC_003102.1 + 16415 0.66 0.897783
Target:  5'- aCGACGACGGgCgucugguugaUCGCCGC-GAUucugccGCAGu -3'
miRNA:   3'- -GCUGCUGUCgG----------AGCGGCGuCUA------UGUC- -5'
11696 5' -55.6 NC_003102.1 + 133870 0.66 0.893829
Target:  5'- gCGACGACGcggccgagcugcaucGCCUUGCCGUcGGUGa-- -3'
miRNA:   3'- -GCUGCUGU---------------CGGAGCGGCGuCUAUguc -5'
11696 5' -55.6 NC_003102.1 + 35753 0.67 0.877189
Target:  5'- cCGAUGACAGuUCUCGCgGC-GAUAUc- -3'
miRNA:   3'- -GCUGCUGUC-GGAGCGgCGuCUAUGuc -5'
11696 5' -55.6 NC_003102.1 + 88040 0.67 0.876467
Target:  5'- gCGGCGAUgguagaaGGCgUCgaaGCCGCAGucauUACAGa -3'
miRNA:   3'- -GCUGCUG-------UCGgAG---CGGCGUCu---AUGUC- -5'
11696 5' -55.6 NC_003102.1 + 17733 0.67 0.862347
Target:  5'- gCGGCGGCGGCggCgGCgGCGGcgGCGGu -3'
miRNA:   3'- -GCUGCUGUCGgaG-CGgCGUCuaUGUC- -5'
11696 5' -55.6 NC_003102.1 + 90052 0.67 0.854609
Target:  5'- cCGAUGACAuccuGUCUgGCgGCGGcgGCGGa -3'
miRNA:   3'- -GCUGCUGU----CGGAgCGgCGUCuaUGUC- -5'
11696 5' -55.6 NC_003102.1 + 17464 0.68 0.830199
Target:  5'- uCGAUGGCGGgCaCGCCGCAcgaucGGUACAu -3'
miRNA:   3'- -GCUGCUGUCgGaGCGGCGU-----CUAUGUc -5'
11696 5' -55.6 NC_003102.1 + 130895 0.68 0.804153
Target:  5'- uGGCGACGGCgUCGCUGUguguagcauuugGGAUAUu- -3'
miRNA:   3'- gCUGCUGUCGgAGCGGCG------------UCUAUGuc -5'
11696 5' -55.6 NC_003102.1 + 129101 0.69 0.776692
Target:  5'- gCGGCGGCGGCCga--CGCAGGaccgGCAGu -3'
miRNA:   3'- -GCUGCUGUCGGagcgGCGUCUa---UGUC- -5'
11696 5' -55.6 NC_003102.1 + 77314 0.7 0.738291
Target:  5'- uGACGACuauugcgaAGCCgUCGUCGUAGAUAUc- -3'
miRNA:   3'- gCUGCUG--------UCGG-AGCGGCGUCUAUGuc -5'
11696 5' -55.6 NC_003102.1 + 15811 0.7 0.708476
Target:  5'- -cACGAC-GUCUCGCCGC-GAUACGu -3'
miRNA:   3'- gcUGCUGuCGGAGCGGCGuCUAUGUc -5'
11696 5' -55.6 NC_003102.1 + 129177 0.72 0.616466
Target:  5'- -aGCGGCGGCCggCGCCGaCGGA-GCAGu -3'
miRNA:   3'- gcUGCUGUCGGa-GCGGC-GUCUaUGUC- -5'
11696 5' -55.6 NC_003102.1 + 13067 0.72 0.606193
Target:  5'- aGACGgaaACGGUCUCGCCGUAGAcauCAa -3'
miRNA:   3'- gCUGC---UGUCGGAGCGGCGUCUau-GUc -5'
11696 5' -55.6 NC_003102.1 + 81414 1.09 0.002928
Target:  5'- uCGACGACAGCCUCGCCGCAGAUACAGa -3'
miRNA:   3'- -GCUGCUGUCGGAGCGGCGUCUAUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.