miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11697 3' -37.3 NC_003102.1 + 30339 0.71 1
Target:  5'- -aUGGACAUUUUAUGAaagUGUcgUGGAGCAa -3'
miRNA:   3'- uaGCUUGUAAAAUACU---GCA--AUUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 85296 0.7 1
Target:  5'- aAUCaGACcgUUUGUGuuGUUGAAACAc -3'
miRNA:   3'- -UAGcUUGuaAAAUACugCAAUUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 1029 0.68 1
Target:  5'- gGUCGAACAUUUUAU--CGU--AAACGa -3'
miRNA:   3'- -UAGCUUGUAAAAUAcuGCAauUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 79631 0.68 1
Target:  5'- aAUCGGACGUg--AUGAUcacguagccgucgGUUGGAACGg -3'
miRNA:   3'- -UAGCUUGUAaaaUACUG-------------CAAUUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 118074 0.67 1
Target:  5'- cUCGAACAUguug-GACGUuuucauUGAAACu -3'
miRNA:   3'- uAGCUUGUAaaauaCUGCA------AUUUUGu -5'
11697 3' -37.3 NC_003102.1 + 40159 0.66 1
Target:  5'- uUCGAGCAcg--AUGGCGUguucucGGAGCGc -3'
miRNA:   3'- uAGCUUGUaaaaUACUGCAa-----UUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 54598 0.66 1
Target:  5'- aAUCGAACcuggccgacuuUUUUuUGACGUUAuuGCAc -3'
miRNA:   3'- -UAGCUUGu----------AAAAuACUGCAAUuuUGU- -5'
11697 3' -37.3 NC_003102.1 + 23578 0.67 1
Target:  5'- cUCGAACGU--UGUGaACGUgGAAACc -3'
miRNA:   3'- uAGCUUGUAaaAUAC-UGCAaUUUUGu -5'
11697 3' -37.3 NC_003102.1 + 103898 0.7 1
Target:  5'- aGUCGAACAUgUUGaacacuUGACGUUGcuaguuuuagucGAACAu -3'
miRNA:   3'- -UAGCUUGUAaAAU------ACUGCAAU------------UUUGU- -5'
11697 3' -37.3 NC_003102.1 + 103826 0.7 1
Target:  5'- aGUCGAACAUgUUGaacacuUGACGUUGcuaguuuuagucGAACAu -3'
miRNA:   3'- -UAGCUUGUAaAAU------ACUGCAAU------------UUUGU- -5'
11697 3' -37.3 NC_003102.1 + 137702 0.71 1
Target:  5'- cUCGAACAUgUUUAUGAacaUGUUAuGAACAa -3'
miRNA:   3'- uAGCUUGUA-AAAUACU---GCAAU-UUUGU- -5'
11697 3' -37.3 NC_003102.1 + 9794 0.72 1
Target:  5'- gGUCGAACAgcagUUUGUGAUcaacaUGAAACAg -3'
miRNA:   3'- -UAGCUUGUa---AAAUACUGca---AUUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 27016 0.75 1
Target:  5'- -cUGAACcgUUg--GACGUUGAAACAg -3'
miRNA:   3'- uaGCUUGuaAAauaCUGCAAUUUUGU- -5'
11697 3' -37.3 NC_003102.1 + 85885 1.1 0.187171
Target:  5'- cAUCGAACAUUUUAUGACGUUAAAACAg -3'
miRNA:   3'- -UAGCUUGUAAAAUACUGCAAUUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.